Variant report

Variant	rs10851648
Chromosome Location	chr15:59609753-59609754
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59608371..59610466-chr15:59663402..59665694,2	MCF-7	breast:
2	chr15:59576379..59578865-chr15:59606956..59609965,3	MCF-7	breast:
3	chr15:59606296..59607866-chr15:59608683..59610197,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157470	Chromatin interaction
ENSG00000157483	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10851649	0.98[ASN][1000 genomes]
rs11854485	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2054717	0.82[ASN][1000 genomes]
rs34395963	0.96[ASN][1000 genomes]
rs4775149	0.95[ASN][1000 genomes]
rs7162847	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7163858	0.84[ASN][1000 genomes]
rs7164264	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7169866	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv934082	chr15:59608605-59733211	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv457175	chr15:59609753-59681214	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv569603	chr15:59609753-59681214	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59600000-59627400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:59604800-59610200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr15:59605200-59610200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:59605400-59609800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:59605400-59609800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr15:59605400-59609800	Enhancers	HSMM	muscle
7	chr15:59605400-59610200	Enhancers	Osteobl	bone
8	chr15:59605800-59610000	Enhancers	NHLF	lung
9	chr15:59605800-59610600	Enhancers	NHDF-Ad	bronchial
10	chr15:59606400-59614000	Weak transcription	Fetal Intestine Small	intestine
11	chr15:59606600-59621200	Weak transcription	Fetal Kidney	kidney
12	chr15:59606800-59615600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:59606800-59621400	Weak transcription	Gastric	stomach
14	chr15:59606800-59623000	Weak transcription	Lung	lung
15	chr15:59606800-59631600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr15:59607000-59620200	Weak transcription	Esophagus	oesophagus
17	chr15:59607200-59610600	Enhancers	Hela-S3	cervix
18	chr15:59607600-59611000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr15:59607800-59609800	Enhancers	NH-A	brain
20	chr15:59608600-59609800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:59608600-59609800	Weak transcription	Left Ventricle	heart
22	chr15:59608600-59610400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:59608600-59615000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr15:59608600-59619000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr15:59608600-59619400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr15:59608600-59621400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:59608600-59621400	Weak transcription	Ovary	ovary
28	chr15:59608600-59622600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr15:59608600-59623200	Weak transcription	Psoas Muscle	Psoas
30	chr15:59608600-59623400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr15:59608600-59625800	Weak transcription	HMEC	breast
32	chr15:59608800-59609800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr15:59608800-59621400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr15:59609000-59610000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:59609000-59610000	Enhancers	Stomach Mucosa	stomach
36	chr15:59609200-59609800	Enhancers	Right Ventricle	heart
37	chr15:59609200-59609800	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr15:59609200-59610000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:59609400-59609800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr15:59609400-59610000	Genic enhancers	NHEK	skin
41	chr15:59609400-59610600	Enhancers	Aorta	Aorta
42	chr15:59609400-59610800	ZNF genes & repeats	GM12878-XiMat	blood
43	chr15:59609600-59609800	Enhancers	Pancreas	Pancrea
44	chr15:59609600-59609800	Enhancers	Small Intestine	intestine
45	chr15:59609600-59609800	Enhancers	Spleen	Spleen
46	chr15:59609600-59610000	Transcr. at gene 5' and 3'	A549	lung
47	chr15:59609600-59610600	Enhancers	Fetal Heart	heart
48	chr15:59609600-59619000	Weak transcription	Rectal Mucosa Donor 31	rectum

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