Variant report

Variant	rs10851847
Chromosome Location	chr15:72111760-72111761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11633167	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11634608	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12050794	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12439494	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12898728	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12898868	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12912771	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1481862	0.86[AMR][1000 genomes]
rs16956273	0.84[EUR][1000 genomes]
rs16956369	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2128112	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2306489	0.81[AMR][1000 genomes]
rs2306576	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2415120	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2415121	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2415126	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2415128	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28650442	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28717020	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2899776	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2929508	0.81[AMR][1000 genomes]
rs2929509	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2929510	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2929511	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2929513	0.83[AMR][1000 genomes]
rs2929532	0.81[AMR][1000 genomes]
rs2930069	0.87[AMR][1000 genomes]
rs2957365	0.81[AMR][1000 genomes]
rs2957724	0.84[AMR][1000 genomes]
rs2957728	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2957734	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2957735	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2957736	0.81[EUR][1000 genomes]
rs2957740	0.80[AMR][1000 genomes]
rs2957742	0.82[AMR][1000 genomes]
rs2957750	0.81[AMR][1000 genomes]
rs3759820	0.81[AMR][1000 genomes]
rs3784313	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4511483	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4526973	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4777466	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62023343	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6494973	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6494975	0.87[AMR][1000 genomes]
rs7173626	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7175373	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7403191	0.81[AMR][1000 genomes]
rs7496582	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7497104	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8036307	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8178	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8557	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9302260	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs982752	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10851847	MYO9A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72100400-72112000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:72100600-72113800	Weak transcription	Fetal Lung	lung
3	chr15:72101200-72112600	Weak transcription	Right Atrium	heart
4	chr15:72103400-72114000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:72105600-72112400	Weak transcription	HSMMtube	muscle
6	chr15:72106000-72114200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr15:72106200-72113800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr15:72106800-72114400	Weak transcription	Fetal Kidney	kidney
9	chr15:72107200-72115200	Weak transcription	Fetal Stomach	stomach
10	chr15:72107600-72112000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr15:72107800-72115600	Weak transcription	Fetal Heart	heart
12	chr15:72108000-72118600	Weak transcription	Fetal Brain Female	brain
13	chr15:72108600-72120600	Weak transcription	Fetal Brain Male	brain
14	chr15:72109600-72112800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:72110000-72113800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr15:72110600-72118200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:72110800-72116400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:72110800-72122800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:72111000-72113200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr15:72111000-72114000	Strong transcription	Fetal Muscle Leg	muscle
21	chr15:72111400-72114000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr15:72111600-72111800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:72111600-72116600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--

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