Variant report

Variant	rs10851870
Chromosome Location	chr15:74497766-74497767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr15:74497339-74497796	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:74496432..74499341-chr15:74503073..74505170,2	MCF-7	breast:
2	chr15:74495756..74498011-chr15:74498578..74500648,2	K562	blood:
3	chr15:74495538..74499115-chr15:74503082..74506667,3	MCF-7	breast:
4	chr15:74497610..74499444-chr15:74504967..74507735,2	K562	blood:

Variant related genes	Relation type
STRA6	TF binding region
ENSG00000137868	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12911385	0.82[ASN][1000 genomes]
rs2629727	0.87[ASN][1000 genomes]
rs351156	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs351219	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs351220	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs351222	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs351223	0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs351224	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs435293	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv904345	chr15:74458181-74526596	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv904347	chr15:74462629-74537101	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904348	chr15:74462629-74542686	Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv471253	chr15:74489207-74545148	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74489200-74509600	Weak transcription	Gastric	stomach
2	chr15:74489400-74499000	Weak transcription	Brain Anterior Caudate	brain
3	chr15:74491000-74503200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:74492600-74497800	Enhancers	GM12878-XiMat	blood
5	chr15:74492600-74498000	Enhancers	Fetal Lung	lung
6	chr15:74492600-74503200	Enhancers	Fetal Muscle Leg	muscle
7	chr15:74493400-74498000	Enhancers	NH-A	brain
8	chr15:74494000-74498400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:74494000-74500200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr15:74494200-74501000	Weak transcription	HSMM	muscle
11	chr15:74494400-74498400	Enhancers	Primary hematopoietic stem cells	blood
12	chr15:74494400-74500200	Enhancers	Fetal Brain Male	brain
13	chr15:74494600-74498400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:74494800-74498000	Enhancers	Primary T cells from cord blood	blood
15	chr15:74495800-74498200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:74495800-74499600	Enhancers	Brain Germinal Matrix	brain
17	chr15:74495800-74500200	Enhancers	Fetal Thymus	thymus
18	chr15:74496200-74497800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr15:74496200-74498000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:74496400-74500200	Enhancers	Fetal Brain Female	brain
21	chr15:74496600-74498200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:74496600-74498200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:74496600-74499000	Weak transcription	Fetal Intestine Large	intestine
24	chr15:74496600-74499000	Weak transcription	Fetal Kidney	kidney
25	chr15:74496800-74497800	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr15:74496800-74498000	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr15:74496800-74498200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr15:74496800-74498200	Enhancers	Lung	lung
29	chr15:74496800-74498400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
30	chr15:74496800-74499000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr15:74496800-74499200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:74496800-74500600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:74496800-74501200	Enhancers	Spleen	Spleen
34	chr15:74496800-74501600	Weak transcription	A549	lung
35	chr15:74497000-74498000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr15:74497000-74498000	Weak transcription	Fetal Intestine Small	intestine
37	chr15:74497000-74498000	Weak transcription	Fetal Stomach	stomach
38	chr15:74497000-74499800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr15:74497000-74500000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr15:74497000-74500000	Enhancers	Fetal Muscle Trunk	muscle
41	chr15:74497000-74501200	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr15:74497000-74505800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr15:74497200-74499000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr15:74497400-74497800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr15:74497400-74498200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
46	chr15:74497400-74498200	Enhancers	Adipose Nuclei	Adipose
47	chr15:74497400-74498200	Enhancers	Fetal Heart	heart
48	chr15:74497400-74498200	Enhancers	Right Atrium	heart
49	chr15:74497400-74498200	Enhancers	Right Ventricle	heart
50	chr15:74497400-74498400	Enhancers	Left Ventricle	heart

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