Variant report

Variant	rs10851883
Chromosome Location	chr15:75991451-75991452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10467951	0.92[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap]
rs12594714	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12908447	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2593293	0.92[CEU][hapmap];0.83[CHB][hapmap]
rs2675217	0.92[CEU][hapmap];0.91[CHB][hapmap]
rs4886456	0.96[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap]
rs4886953	0.85[EUR][1000 genomes]
rs749161	0.92[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap]
rs8023610	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8032669	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
4	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	esv1800424	chr15:75692303-75991451	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
6	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
7	esv1813854	chr15:75898640-76002392	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
8	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
9	nsv904391	chr15:75930757-76001654	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
10	nsv904392	chr15:75930757-76039262	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
11	nsv904393	chr15:75932177-76001654	Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
12	nsv904394	chr15:75948671-76039262	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
13	nsv904396	chr15:75961518-76071105	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
14	nsv569997	chr15:75965169-75991451	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
15	nsv984092	chr15:75970252-76000687	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10851883	NRG4	cis	cerebellum	SCAN
rs10851883	NRG4	cis	parietal	SCAN
rs10851883	ETFA	cis	parietal	SCAN

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75966400-75993200	Weak transcription	Hela-S3	cervix
2	chr15:75984000-75993000	Enhancers	Primary B cells from cord blood	blood
3	chr15:75984600-75995200	Enhancers	Primary B cells from peripheral blood	blood
4	chr15:75985600-75992600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:75985600-75992800	Enhancers	Right Ventricle	heart
6	chr15:75985800-75992400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:75985800-75993800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr15:75985800-75998800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr15:75986400-75992000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:75987000-75991600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:75987000-75998600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:75987200-75994200	Enhancers	NHDF-Ad	bronchial
13	chr15:75987200-75998000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr15:75987400-75992200	Enhancers	Colon Smooth Muscle	Colon
15	chr15:75987400-75992200	Weak transcription	Fetal Brain Male	brain
16	chr15:75987400-75994400	Weak transcription	Psoas Muscle	Psoas
17	chr15:75987400-75998600	Weak transcription	Gastric	stomach
18	chr15:75987600-75992200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:75987800-75991600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr15:75987800-75992200	Weak transcription	Brain Germinal Matrix	brain
21	chr15:75987800-75996600	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr15:75987800-76004800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr15:75988000-75991800	Weak transcription	Left Ventricle	heart
24	chr15:75988000-75992200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr15:75988200-75991600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr15:75988200-75992000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr15:75988200-75992000	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr15:75988200-75992000	Weak transcription	Fetal Intestine Small	intestine
29	chr15:75988200-75992000	Weak transcription	HSMM	muscle
30	chr15:75988200-75992800	Weak transcription	Fetal Thymus	thymus
31	chr15:75988200-75994400	Weak transcription	K562	blood
32	chr15:75988200-75994800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr15:75989000-75992000	Weak transcription	Brain Anterior Caudate	brain
34	chr15:75989400-75991600	Weak transcription	GM12878-XiMat	blood
35	chr15:75989400-75997200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr15:75989600-75992000	Weak transcription	Esophagus	oesophagus
37	chr15:75989600-75993600	Enhancers	HMEC	breast
38	chr15:75989600-75995000	Enhancers	Fetal Lung	lung
39	chr15:75989800-75995000	Enhancers	Adipose Nuclei	Adipose
40	chr15:75989800-75995000	Enhancers	Placenta	Placenta
41	chr15:75990000-75991600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr15:75990000-75991600	Weak transcription	HSMMtube	muscle
43	chr15:75990000-75992000	Weak transcription	Right Atrium	heart
44	chr15:75990000-75992200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr15:75990000-75998400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr15:75990200-75991600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr15:75990200-75991600	Weak transcription	Brain Hippocampus Middle	brain
48	chr15:75990200-75995000	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr15:75990200-75995200	Enhancers	Rectal Smooth Muscle	rectum
50	chr15:75990200-75996800	Weak transcription	Brain Inferior Temporal Lobe	brain

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