Variant report

Variant	rs10851885
Chromosome Location	chr15:76304503-76304504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr15:76304410-76305114	A549	lung:	n/a	n/a
2	FOS	chr15:76304271-76304764	MCF10A-Er-Src	breast:	n/a	chr15:76304599-76304611 chr15:76304600-76304610 chr15:76304602-76304613 chr15:76304601-76304609
3	MAX	chr15:76304329-76305130	ECC-1	luminal epithelium:	n/a	n/a
4	RCOR1	chr15:76304501-76304890	K562	blood:	n/a	n/a
5	USF2	chr15:76304482-76305009	Hela-S3	cervix:	n/a	n/a
6	ZMIZ1	chr15:76304299-76304949	K562	blood:	n/a	n/a
7	MXI1	chr15:76304424-76305006	Hela-S3	cervix:	n/a	n/a
8	MAFK	chr15:76304138-76304907	Hela-S3	cervix:	n/a	n/a
9	JUND	chr15:76304387-76304943	K562	blood:	n/a	chr15:76304599-76304611 chr15:76304600-76304610 chr15:76304602-76304613 chr15:76304601-76304609
10	TCF12	chr15:76304400-76304970	ECC-1	luminal epithelium:	n/a	n/a
11	TEAD4	chr15:76303925-76305060	ECC-1	luminal epithelium:	n/a	chr15:76304967-76304976
12	EP300	chr15:76304370-76305068	ECC-1	luminal epithelium:	n/a	n/a
13	ARID3A	chr15:76304405-76304909	K562	blood:	n/a	n/a
14	EP300	chr15:76304178-76305092	A549	lung:	n/a	n/a
15	TBP	chr15:76304019-76305082	Hela-S3	cervix:	n/a	n/a
16	MYC	chr15:76304434-76304956	K562	blood:	n/a	n/a
17	CEBPB	chr15:76303866-76304979	Hela-S3	cervix:	n/a	n/a
18	MAX	chr15:76304389-76304962	Hela-S3	cervix:	n/a	n/a
19	EP300	chr15:76304382-76304923	K562	blood:	n/a	n/a
20	GTF3C2	chr15:76304028-76304774	Hela-S3	cervix:	n/a	n/a
21	SP1	chr15:76304434-76305063	A549	lung:	n/a	n/a
22	CUX1	chr15:76304346-76304781	K562	blood:	n/a	n/a
23	NR2F2	chr15:76304476-76305055	MCF-7	breast:	n/a	n/a
24	POLR2A	chr15:76304321-76304946	Hela-S3	cervix:	n/a	n/a
25	POLR2A	chr15:76304367-76304552	Hela-S3	cervix:	n/a	n/a
26	MAX	chr15:76304472-76305080	A549	lung:	n/a	n/a
27	KAP1	chr15:76304339-76304899	U2OS	brain:	n/a	n/a
28	POLR2A	chr15:76304393-76304903	Hela-S3	cervix:	n/a	n/a
29	TBL1XR1	chr15:76304367-76304902	K562	blood:	n/a	n/a
30	TBP	chr15:76304447-76304901	K562	blood:	n/a	n/a
31	RFX5	chr15:76304062-76305406	Hela-S3	cervix:	n/a	n/a
32	FOSL2	chr15:76304324-76304878	A549	lung:	n/a	chr15:76304599-76304611 chr15:76304600-76304610 chr15:76304602-76304613 chr15:76304601-76304609
33	POLR2A	chr15:76303857-76305008	Hela-S3	cervix:	n/a	n/a
34	CEBPB	chr15:76304480-76304890	K562	blood:	n/a	n/a
35	MYC	chr15:76303550-76304824	MCF10A-Er-Src	breast:	n/a	n/a
36	NR2F2	chr15:76304436-76305056	K562	blood:	n/a	n/a
37	EP300	chr15:76303884-76305074	Hela-S3	cervix:	n/a	n/a
38	MAX	chr15:76304048-76305017	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
NRG4	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11072563	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11634260	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904398	chr15:76220285-76359055	Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10851885	CSK	cis	parietal	SCAN
rs10851885	UBE2Q2	cis	parietal	SCAN
rs10851885	NRG4	cis	parietal	SCAN
rs10851885	NRG4	cis	cerebellum	SCAN

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76302800-76304800	Active TSS	Hela-S3	cervix
2	chr15:76303000-76304800	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr15:76303200-76305000	Active TSS	Stomach Mucosa	stomach
4	chr15:76303600-76305000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:76303800-76304600	Active TSS	Liver	Liver
6	chr15:76303800-76304800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:76303800-76305000	Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr15:76303800-76305000	Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr15:76303800-76305200	Active TSS	A549	lung
10	chr15:76304000-76304600	Active TSS	NHEK	skin
11	chr15:76304000-76304800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr15:76304000-76304800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:76304000-76304800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
14	chr15:76304000-76304800	Active TSS	Fetal Stomach	stomach
15	chr15:76304000-76304800	Active TSS	Pancreas	Pancrea
16	chr15:76304000-76304800	Active TSS	Rectal Mucosa Donor 31	rectum
17	chr15:76304000-76305000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr15:76304000-76305000	Active TSS	Aorta	Aorta
19	chr15:76304000-76305000	Active TSS	Psoas Muscle	Psoas
20	chr15:76304000-76305000	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr15:76304200-76304600	Active TSS	Primary monocytes fromperipheralblood	blood
22	chr15:76304200-76304600	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr15:76304200-76304800	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr15:76304200-76304800	Active TSS	K562	blood
25	chr15:76304200-76305000	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr15:76304200-76305000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:76304400-76304800	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr15:76304400-76304800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:76304400-76304800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr15:76304400-76304800	Enhancers	Colon Smooth Muscle	Colon
31	chr15:76304400-76304800	Enhancers	HSMM	muscle
32	chr15:76304400-76304800	Active TSS	Monocytes-CD14+_RO01746	blood
33	chr15:76304400-76304800	Flanking Bivalent TSS/Enh	Osteobl	bone
34	chr15:76304400-76305000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:76304400-76305000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:76304400-76305000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr15:76304400-76305000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr15:76304400-76305000	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
39	chr15:76304400-76305000	Active TSS	Adipose Nuclei	Adipose
40	chr15:76304400-76305000	Active TSS	Rectal Smooth Muscle	rectum
41	chr15:76304400-76305000	Flanking Active TSS	HMEC	breast
42	chr15:76304400-76305000	Bivalent/Poised TSS	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links