Variant report

Variant	rs10852182
Chromosome Location	chr15:93413594-93413595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93347590..93349786-chr15:93410153..93413692,3	MCF-7	breast:
2	chr15:93410852..93415965-chr15:93422830..93429141,8	K562	blood:
3	chr15:93372869..93375694-chr15:93412741..93415071,2	MCF-7	breast:
4	chr15:93397765..93404838-chr15:93410272..93414991,6	MCF-7	breast:
5	chr15:93360728..93362505-chr15:93412571..93415555,2	MCF-7	breast:
6	chr15:93413461..93416683-chr15:93420184..93421907,3	K562	blood:
7	chr15:93362859..93367460-chr15:93410831..93415229,10	MCF-7	breast:
8	chr15:93361853..93370156-chr15:93409891..93415394,15	MCF-7	breast:
9	chr15:93411880..93416683-chr15:93418729..93427514,10	K562	blood:
10	chr15:93353098..93355321-chr15:93411583..93413814,3	K562	blood:
11	chr15:93381669..93383424-chr15:93412314..93413957,2	MCF-7	breast:
12	chr15:93351239..93355096-chr15:93409806..93415420,10	MCF-7	breast:
13	chr15:93413469..93415304-chr15:93448158..93450085,2	K562	blood:
14	chr15:93350501..93355702-chr15:93411636..93415920,12	MCF-7	breast:
15	chr15:93412014..93413857-chr15:93441466..93443735,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272888	Chromatin interaction
ENSG00000173575	Chromatin interaction
ENSG00000264123	Chromatin interaction
ENSG00000258922	Chromatin interaction
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11074114	0.93[CEU][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17648415	0.81[CEU][hapmap];0.89[TSI][hapmap]
rs34501077	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62023101	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6496999	0.83[ASN][1000 genomes]
rs6497001	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6497003	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7167241	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7168383	0.85[CHD][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7170382	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7183378	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8035159	0.85[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
5	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
6	nsv1047496	chr15:93412778-93475878	Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
7	nsv1036560	chr15:93413594-93462163	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93411800-93414000	Enhancers	Placenta	Placenta
2	chr15:93412000-93413800	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr15:93412200-93413600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:93412200-93413800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr15:93412200-93413800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:93412200-93413800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:93412200-93413800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:93412200-93413800	Enhancers	Left Ventricle	heart
9	chr15:93412200-93413800	Enhancers	Lung	lung
10	chr15:93412200-93413800	Enhancers	Pancreas	Pancrea
11	chr15:93412200-93413800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr15:93412200-93413800	Enhancers	HSMM	muscle
13	chr15:93412200-93413800	Enhancers	HSMMtube	muscle
14	chr15:93412200-93413800	Enhancers	NHDF-Ad	bronchial
15	chr15:93412200-93413800	Enhancers	Osteobl	bone
16	chr15:93412200-93414000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr15:93412200-93414000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:93412200-93414000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:93412200-93414000	Flanking Active TSS	Hela-S3	cervix
20	chr15:93412200-93414000	Enhancers	HMEC	breast
21	chr15:93412200-93414200	Flanking Active TSS	A549	lung
22	chr15:93412400-93413600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:93412400-93413600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr15:93412400-93413600	Enhancers	Esophagus	oesophagus
25	chr15:93412400-93413600	Enhancers	Gastric	stomach
26	chr15:93412400-93413600	Enhancers	Right Ventricle	heart
27	chr15:93412400-93413600	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr15:93412400-93413800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:93412400-93413800	Enhancers	Muscle Satellite Cultured Cells	--
30	chr15:93412400-93413800	Enhancers	Fetal Kidney	kidney
31	chr15:93412400-93413800	Enhancers	Fetal Lung	lung
32	chr15:93412400-93413800	Enhancers	Fetal Stomach	stomach
33	chr15:93412400-93413800	Enhancers	Ovary	ovary
34	chr15:93412400-93413800	Enhancers	Spleen	Spleen
35	chr15:93412600-93413800	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr15:93412600-93414000	Enhancers	Fetal Heart	heart
37	chr15:93412600-93425000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr15:93412800-93413800	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr15:93412800-93413800	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr15:93412800-93414000	Enhancers	Colon Smooth Muscle	Colon
41	chr15:93413000-93413600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr15:93413000-93413800	Enhancers	Pancreatic Islets	Pancreatic Islet
43	chr15:93413000-93413800	Enhancers	Stomach Mucosa	stomach
44	chr15:93413000-93413800	Flanking Active TSS	Stomach Smooth Muscle	stomach
45	chr15:93413200-93413600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr15:93413200-93413800	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr15:93413200-93413800	Enhancers	Fetal Intestine Small	intestine
48	chr15:93413200-93413800	Bivalent Enhancer	Fetal Muscle Leg	muscle
49	chr15:93413400-93413800	Enhancers	Fetal Thymus	thymus
50	chr15:93413400-93413800	Enhancers	Rectal Mucosa Donor 31	rectum

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