Variant report

Variant	rs10853092
Chromosome Location	chr17:45947053-45947054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:45932447..45934017-chr17:45946949..45949392,2	K562	blood:
2	chr17:45945306..45947161-chr17:45950628..45952334,2	K562	blood:
3	chr17:45946630..45948795-chr17:46087511..46090189,2	K562	blood:
4	chr17:45945622..45948288-chr17:46019914..46021881,2	MCF-7	breast:
5	chr17:45932447..45935433-chr17:45945391..45949392,4	K562	blood:
6	chr17:45944200..45947403-chr17:45947781..45950408,6	K562	blood:
7	chr17:45944968..45947939-chr17:45958464..45960415,2	K562	blood:
8	chr17:45924111..45929589-chr17:45940263..45947435,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000189120	Chromatin interaction
ENSG00000266821	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11650044	1.00[ASN][1000 genomes]
rs1986719	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2229368	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2325715	1.00[ASN][1000 genomes]
rs2428607	1.00[ASN][1000 genomes]
rs2525108	1.00[ASN][1000 genomes]
rs2525111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2597170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7405753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8078698	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498122	chr17:45763853-46064327	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv908573	chr17:45858487-45956073	Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv518892	chr17:45887951-46029432	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45942200-45948200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr17:45943000-45950000	Weak transcription	HSMM	muscle
3	chr17:45943200-45947600	Weak transcription	A549	lung
4	chr17:45944000-45947800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr17:45945000-45948400	Enhancers	K562	blood
6	chr17:45945800-45947800	Enhancers	Placenta	Placenta
7	chr17:45946000-45949600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr17:45946400-45947200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr17:45946400-45947600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr17:45946400-45947800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr17:45946400-45948000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
12	chr17:45946600-45948000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
13	chr17:45946600-45948000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr17:45946600-45948200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr17:45946600-45948600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
16	chr17:45946800-45947400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
17	chr17:45946800-45947600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
18	chr17:45946800-45948000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr17:45946800-45948200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
20	chr17:45946800-45948200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
21	chr17:45946800-45948400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
22	chr17:45947000-45948000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
23	chr17:45947000-45948200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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