Variant report

Variant	rs10853377
Chromosome Location	chr18:9361415-9361416
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:9359304..9362092-chr18:9474683..9476279,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000017797	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12456408	0.91[EUR][1000 genomes]
rs1443599	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28455986	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7244942	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72941932	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1056407	chr18:9144345-9553764	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1062025	chr18:9287249-9552470	Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv543643	chr18:9287249-9552470	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv909365	chr18:9299538-9400422	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9335400-9369400	Weak transcription	Pancreas	Pancrea
2	chr18:9335400-9371400	Weak transcription	Gastric	stomach
3	chr18:9335600-9366200	Weak transcription	Left Ventricle	heart
4	chr18:9335600-9372600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr18:9335800-9366200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr18:9335800-9367600	Weak transcription	Fetal Thymus	thymus
7	chr18:9335800-9367600	Weak transcription	Lung	lung
8	chr18:9335800-9370200	Weak transcription	Adipose Nuclei	Adipose
9	chr18:9336000-9366200	Weak transcription	Brain Angular Gyrus	brain
10	chr18:9338400-9361600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr18:9338400-9366200	Weak transcription	Brain Anterior Caudate	brain
12	chr18:9338800-9366000	Weak transcription	Brain Hippocampus Middle	brain
13	chr18:9339600-9365600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr18:9341000-9371800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr18:9341200-9366400	Weak transcription	Brain Substantia Nigra	brain
16	chr18:9341200-9367400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr18:9341200-9391400	Weak transcription	Liver	Liver
18	chr18:9341200-9403800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr18:9341400-9366200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr18:9344000-9366000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr18:9344000-9367400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr18:9344200-9367600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr18:9344200-9367800	Weak transcription	Primary B cells from cord blood	blood
24	chr18:9344400-9404200	Weak transcription	Primary T cells from cord blood	blood
25	chr18:9345000-9361800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr18:9345200-9367400	Weak transcription	Fetal Brain Female	brain
27	chr18:9345600-9367000	Weak transcription	Fetal Intestine Large	intestine
28	chr18:9345600-9367400	Weak transcription	Placenta	Placenta
29	chr18:9345600-9377600	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr18:9348600-9362600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr18:9348600-9365600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr18:9348600-9369600	Weak transcription	K562	blood
33	chr18:9348800-9361600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr18:9348800-9366400	Weak transcription	Fetal Kidney	kidney
35	chr18:9348800-9367400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr18:9348800-9367600	Weak transcription	NHDF-Ad	bronchial
37	chr18:9349000-9367400	Weak transcription	Dnd41	blood
38	chr18:9349200-9362600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr18:9349200-9366000	Weak transcription	HUVEC	blood vessel
40	chr18:9349400-9364200	Weak transcription	NH-A	brain
41	chr18:9352800-9366200	Weak transcription	Colon Smooth Muscle	Colon
42	chr18:9354400-9362600	Weak transcription	Rectal Smooth Muscle	rectum
43	chr18:9354400-9362600	Weak transcription	HSMMtube	muscle
44	chr18:9354400-9380400	Weak transcription	NHLF	lung
45	chr18:9354800-9362800	Weak transcription	Osteobl	bone
46	chr18:9354800-9364400	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr18:9354800-9365800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr18:9356400-9361600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr18:9356600-9361800	Weak transcription	Fetal Heart	heart
50	chr18:9356800-9362600	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links