Variant report

Variant	rs10853419
Chromosome Location	chr18:29698665-29698666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29683311..29687013-chr18:29695262..29699128,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10048285	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10048287	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1054667	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10853418	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11081747	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11661197	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11663563	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12605137	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2010813	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2018380	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2048245	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3980846	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4799632	0.84[EUR][1000 genomes]
rs4799633	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7238559	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10853419	RNF138	Cis_1M	lymphoblastoid	RTeQTL
rs10853419	RNF138	cis	Esophagus Mucosa	GTEx

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29673400-29713800	Weak transcription	Spleen	Spleen
2	chr18:29673800-29702000	Weak transcription	Pancreas	Pancrea
3	chr18:29673800-29714000	Weak transcription	Esophagus	oesophagus
4	chr18:29673800-29714200	Weak transcription	Ovary	ovary
5	chr18:29673800-29715200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr18:29673800-29715200	Weak transcription	Lung	lung
7	chr18:29673800-29715800	Weak transcription	Colonic Mucosa	Colon
8	chr18:29673800-29717000	Weak transcription	HSMMtube	muscle
9	chr18:29674000-29712000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr18:29674600-29703000	Weak transcription	Osteobl	bone
11	chr18:29674600-29705600	Weak transcription	NHLF	lung
12	chr18:29675000-29717200	Weak transcription	NH-A	brain
13	chr18:29676400-29707000	Weak transcription	Brain Angular Gyrus	brain
14	chr18:29676600-29704800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr18:29676800-29704600	Weak transcription	Fetal Brain Female	brain
16	chr18:29676800-29705000	Weak transcription	Brain Hippocampus Middle	brain
17	chr18:29676800-29717200	Weak transcription	Brain Germinal Matrix	brain
18	chr18:29677000-29713800	Weak transcription	Small Intestine	intestine
19	chr18:29677000-29715600	Weak transcription	Fetal Heart	heart
20	chr18:29677000-29717000	Weak transcription	Aorta	Aorta
21	chr18:29687200-29713600	Strong transcription	Dnd41	blood
22	chr18:29688200-29706400	Strong transcription	Fetal Thymus	thymus
23	chr18:29688200-29712400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr18:29689400-29704600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr18:29689400-29713600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr18:29689800-29700000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr18:29689800-29705000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr18:29689800-29709400	Weak transcription	Gastric	stomach
29	chr18:29689800-29713200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr18:29690200-29706600	Weak transcription	Right Ventricle	heart
31	chr18:29690400-29704800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr18:29690800-29710400	Weak transcription	Colon Smooth Muscle	Colon
33	chr18:29691000-29701400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr18:29691000-29709400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr18:29691000-29712400	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr18:29691000-29712600	Strong transcription	Primary B cells from peripheral blood	blood
37	chr18:29691200-29699400	Strong transcription	Primary B cells from cord blood	blood
38	chr18:29691200-29707200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr18:29691200-29713600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr18:29691400-29715000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr18:29691600-29713000	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr18:29691800-29699200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr18:29691800-29712400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr18:29692000-29699400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr18:29692000-29699600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr18:29692000-29701000	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr18:29692000-29703000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr18:29692200-29698800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr18:29692200-29699200	Strong transcription	Duodenum Mucosa	Duodenum
50	chr18:29692200-29699200	Strong transcription	Rectal Mucosa Donor 29	rectum

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