Variant report

Variant	rs10854603
Chromosome Location	chr22:31474657-31474658
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31358868..31372302-chr22:31474097..31485545,64	MCF-7	breast:
2	chr22:31457775..31462699-chr22:31474304..31478789,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183963	Chromatin interaction
ENSG00000133422	Chromatin interaction
ENSG00000253352	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10427701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11705177	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11705250	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11705313	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11705319	0.87[EUR][1000 genomes]
rs11705369	0.85[EUR][1000 genomes]
rs11705396	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12157450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12165471	0.97[ASN][1000 genomes]
rs12170984	0.95[ASN][1000 genomes]
rs12330058	0.98[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs13057068	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2006301	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35060453	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs5994365	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5994368	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs5994370	0.98[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs5997863	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5997864	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5997866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5997871	0.87[ASN][1000 genomes]
rs5997872	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7284593	0.95[ASN][1000 genomes]
rs7291565	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7292038	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7292982	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs736901	0.90[EUR][1000 genomes]
rs9619166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9619167	0.95[ASN][1000 genomes]
rs9621175	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9896	chr22:31369204-31513933	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv524366	chr22:31440703-31480069	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv829173	chr22:31450043-31543956	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv914975	chr22:31466083-31514477	Active TSS Flanking Active TSS Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv979668	chr22:31473892-31475436	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31465800-31475000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr22:31469800-31476400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr22:31469800-31476400	Weak transcription	HUVEC	blood vessel
4	chr22:31470200-31475000	Weak transcription	Spleen	Spleen
5	chr22:31471400-31476600	Weak transcription	Left Ventricle	heart
6	chr22:31472000-31476400	Weak transcription	HSMMtube	muscle
7	chr22:31472200-31475400	Weak transcription	Lung	lung
8	chr22:31472200-31476200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr22:31472200-31476400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr22:31472400-31475000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr22:31472400-31475000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr22:31472400-31475200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr22:31472400-31476400	Weak transcription	Ovary	ovary
14	chr22:31472400-31476600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr22:31472400-31476600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr22:31472400-31476600	Weak transcription	Psoas Muscle	Psoas
17	chr22:31472600-31475000	Weak transcription	Colonic Mucosa	Colon
18	chr22:31472600-31476200	Weak transcription	Fetal Lung	lung
19	chr22:31472600-31476400	Weak transcription	Adipose Nuclei	Adipose
20	chr22:31472600-31476400	Weak transcription	Right Ventricle	heart
21	chr22:31472600-31476400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr22:31472600-31476400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr22:31472600-31476400	Weak transcription	NHDF-Ad	bronchial
24	chr22:31472600-31476600	Weak transcription	Right Atrium	heart
25	chr22:31472600-31476600	Weak transcription	NHLF	lung
26	chr22:31473600-31476400	Enhancers	Fetal Intestine Large	intestine
27	chr22:31473800-31475400	Enhancers	Placenta	Placenta
28	chr22:31473800-31476400	Enhancers	Fetal Intestine Small	intestine
29	chr22:31473800-31476400	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr22:31474000-31475000	Weak transcription	Pancreas	Pancrea
31	chr22:31474000-31475200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr22:31474200-31474800	Enhancers	Muscle Satellite Cultured Cells	--
33	chr22:31474200-31474800	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr22:31474200-31474800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr22:31474200-31474800	Enhancers	HepG2	liver
36	chr22:31474200-31475000	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr22:31474200-31475000	Enhancers	NHEK	skin
38	chr22:31474200-31475200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr22:31474200-31475400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr22:31474200-31476400	Enhancers	Fetal Muscle Leg	muscle
41	chr22:31474200-31476600	Enhancers	Fetal Stomach	stomach
42	chr22:31474400-31474800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr22:31474400-31475000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr22:31474400-31475400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr22:31474400-31475600	Enhancers	Stomach Mucosa	stomach
46	chr22:31474600-31475200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr22:31474600-31476400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr22:31474600-31476400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr22:31474600-31476400	Weak transcription	HMEC	breast
50	chr22:31474600-31476400	Weak transcription	HSMM	muscle

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