Variant report

Variant	rs10854604
Chromosome Location	chr22:31524980-31524981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:31522240..31525129-chr22:31533508..31536686,3	K562	blood:
2	chr22:31518004..31520636-chr22:31524734..31527354,3	MCF-7	breast:
3	chr22:31524034..31525949-chr22:31528212..31530810,2	MCF-7	breast:
4	chr22:31522608..31525129-chr22:31534842..31536686,3	K562	blood:
5	chr22:31516152..31519079-chr22:31523414..31526420,3	MCF-7	breast:
6	chr22:31502491..31504083-chr22:31522492..31525469,2	K562	blood:

Variant related genes	Relation type
ENSG00000198832	Chromatin interaction
ENSG00000100078	Chromatin interaction
ENSG00000185133	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1468411	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2240431	0.83[EUR][1000 genomes]
rs5753469	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7291682	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7292168	0.95[ASN][1000 genomes]
rs7292187	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs757873	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829173	chr22:31450043-31543956	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv914976	chr22:31475307-31543260	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31519200-31527600	Weak transcription	Esophagus	oesophagus
2	chr22:31519200-31532600	Weak transcription	Ovary	ovary
3	chr22:31519400-31535400	Weak transcription	Lung	lung
4	chr22:31519600-31536000	Weak transcription	Brain Germinal Matrix	brain
5	chr22:31519800-31525600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr22:31519800-31527600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr22:31519800-31528800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr22:31519800-31531600	Weak transcription	Brain Anterior Caudate	brain
9	chr22:31519800-31532000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr22:31519800-31532800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr22:31519800-31536000	Weak transcription	Gastric	stomach
12	chr22:31520000-31527600	Weak transcription	Stomach Mucosa	stomach
13	chr22:31520000-31531200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr22:31520000-31533200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr22:31520200-31535800	Weak transcription	Fetal Brain Female	brain
16	chr22:31520400-31538800	Weak transcription	Right Atrium	heart
17	chr22:31520800-31532000	Strong transcription	Fetal Intestine Small	intestine
18	chr22:31521200-31526800	Weak transcription	Pancreas	Pancrea
19	chr22:31522800-31535200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr22:31523000-31530600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr22:31523400-31535600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr22:31523600-31528200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr22:31523600-31529200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr22:31523600-31530200	Weak transcription	Colonic Mucosa	Colon
25	chr22:31523800-31526600	Weak transcription	Placenta	Placenta
26	chr22:31523800-31529000	Weak transcription	Fetal Stomach	stomach
27	chr22:31523800-31535200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr22:31524200-31527600	Weak transcription	Spleen	Spleen
29	chr22:31524200-31529000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr22:31524200-31530000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr22:31524400-31527600	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr22:31524600-31526600	Weak transcription	HepG2	liver
33	chr22:31524600-31527800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr22:31524600-31528800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr22:31524600-31529000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr22:31524600-31529000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr22:31524600-31533000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr22:31524600-31536000	Weak transcription	Right Ventricle	heart
39	chr22:31524800-31526400	Weak transcription	K562	blood
40	chr22:31524800-31526800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr22:31524800-31527800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr22:31524800-31529800	Weak transcription	Left Ventricle	heart
43	chr22:31524800-31530000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr22:31524800-31531400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr22:31524800-31532200	Weak transcription	Fetal Intestine Large	intestine
46	chr22:31524800-31533000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr22:31524800-31536400	Weak transcription	Rectal Mucosa Donor 29	rectum

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