Variant report

Variant	rs10856940
Chromosome Location	chr4:99700626-99700627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99694068..99697981-chr4:99699617..99702188,3	K562	blood:
2	chr4:99699602..99701729-chr4:99703734..99705341,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10007831	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097632	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2009638	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4428294	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4605663	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532764	0.85[AFR][1000 genomes]
rs6837646	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9998528	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99694000-99710600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:99698800-99701600	Enhancers	HepG2	liver
3	chr4:99699000-99701200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:99699000-99701200	Enhancers	Esophagus	oesophagus
5	chr4:99699000-99701200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr4:99699000-99702000	Enhancers	Fetal Intestine Small	intestine
7	chr4:99699000-99702200	Enhancers	Fetal Intestine Large	intestine
8	chr4:99699000-99703600	Enhancers	Fetal Muscle Leg	muscle
9	chr4:99699200-99700800	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr4:99699400-99702000	Enhancers	HSMMtube	muscle
11	chr4:99699600-99701000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:99699800-99702000	Enhancers	HSMM	muscle
13	chr4:99700000-99701000	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr4:99700000-99701400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:99700000-99701600	Enhancers	Fetal Stomach	stomach
16	chr4:99700000-99702000	Enhancers	Fetal Muscle Trunk	muscle
17	chr4:99700000-99703000	Enhancers	Placenta	Placenta
18	chr4:99700200-99701400	Enhancers	Fetal Lung	lung
19	chr4:99700200-99701600	Enhancers	Ovary	ovary
20	chr4:99700400-99701000	Enhancers	K562	blood
21	chr4:99700400-99701800	Weak transcription	Small Intestine	intestine
22	chr4:99700600-99701200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr4:99700600-99701200	Enhancers	Osteobl	bone
24	chr4:99700600-99702000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr4:99700600-99706000	Weak transcription	Duodenum Mucosa	Duodenum

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