Variant report

Variant	rs10857072
Chromosome Location	chr4:121683755-121683756
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10033707	0.94[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs11098589	0.83[ASN][1000 genomes]
rs12509870	0.82[CEU][hapmap]
rs12509993	0.81[CEU][hapmap]
rs1349347	0.94[CEU][hapmap];0.80[CHD][hapmap];0.81[JPT][hapmap];0.84[TSI][hapmap]
rs1376099	0.94[CEU][hapmap];0.81[JPT][hapmap]
rs1450462	0.84[CEU][hapmap]
rs1511309	0.94[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs17051263	0.83[ASN][1000 genomes]
rs1868715	1.00[CEU][hapmap];0.85[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs1912720	0.94[CEU][hapmap];0.81[JPT][hapmap]
rs1987468	0.91[EUR][1000 genomes]
rs2100237	0.94[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap];0.83[ASN][1000 genomes]
rs2136997	0.94[CEU][hapmap];0.80[JPT][hapmap]
rs2597536	0.83[ASN][1000 genomes]
rs2597537	0.94[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2597538	0.83[ASN][1000 genomes]
rs2597540	0.94[CEU][hapmap];0.81[JPT][hapmap]
rs2667172	0.83[ASN][1000 genomes]
rs2667173	0.83[ASN][1000 genomes]
rs343181	0.94[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap];0.83[ASN][1000 genomes]
rs343190	0.94[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.81[TSI][hapmap];0.83[ASN][1000 genomes]
rs343192	0.94[CEU][hapmap];0.84[TSI][hapmap]
rs3789141	0.93[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.83[TSI][hapmap];0.83[ASN][1000 genomes]
rs3789142	0.83[ASN][1000 genomes]
rs3804174	0.86[CEU][hapmap];0.84[JPT][hapmap]
rs4833670	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs4833675	0.94[CEU][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4833676	0.94[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap];0.85[ASN][1000 genomes]
rs4833677	0.94[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs4833679	0.82[ASN][1000 genomes]
rs59837089	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6534216	0.83[CEU][hapmap]
rs6835471	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1004485	chr4:121542992-121716769	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916737	chr4:121589793-121748847	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv461634	chr4:121623057-121765527	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv595334	chr4:121623057-121765527	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121652600-121687000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:121668400-121690400	Weak transcription	Osteobl	bone
3	chr4:121671800-121684200	Weak transcription	Ovary	ovary
4	chr4:121671800-121697000	Weak transcription	Pancreas	Pancrea
5	chr4:121671800-121728600	Weak transcription	Left Ventricle	heart
6	chr4:121672000-121722400	Weak transcription	Right Ventricle	heart
7	chr4:121672400-121690400	Weak transcription	Lung	lung
8	chr4:121672400-121728800	Weak transcription	Aorta	Aorta
9	chr4:121672400-121728800	Weak transcription	Fetal Stomach	stomach
10	chr4:121673000-121690200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:121673000-121697200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:121673000-121705200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:121673000-121722400	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:121673000-121737400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr4:121673200-121685600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:121673200-121690400	Weak transcription	Fetal Lung	lung
17	chr4:121673400-121690400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:121673600-121692800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:121675400-121693000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr4:121677000-121702800	Weak transcription	Gastric	stomach
21	chr4:121677000-121707800	Weak transcription	Psoas Muscle	Psoas
22	chr4:121677200-121714000	Weak transcription	Fetal Intestine Large	intestine
23	chr4:121677200-121723400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr4:121679600-121721800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:121681600-121685600	Weak transcription	Fetal Heart	heart

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