Variant report

Variant	rs10857574
Chromosome Location	chr10:49665226-49665227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49657927..49660401-chr10:49664471..49666357,2	MCF-7	breast:
2	chr10:49613029..49615967-chr10:49663530..49666398,2	K562	blood:
3	chr10:49663675..49666041-chr10:49714852..49717938,4	K562	blood:

Variant related genes	Relation type
ENSG00000128805	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11101326	0.95[ASN][1000 genomes]
rs11101328	0.87[ASN][1000 genomes]
rs11101331	0.89[ASN][1000 genomes]
rs11101333	0.91[ASN][1000 genomes]
rs11101340	0.83[ASN][1000 genomes]
rs11598657	0.81[ASN][1000 genomes]
rs12355719	0.95[ASN][1000 genomes]
rs12356940	0.95[ASN][1000 genomes]
rs1867579	0.90[ASN][1000 genomes]
rs3813864	0.85[ASN][1000 genomes]
rs3853762	0.83[ASN][1000 genomes]
rs3954044	0.81[ASN][1000 genomes]
rs4838594	0.90[ASN][1000 genomes]
rs4838597	0.80[ASN][1000 genomes]
rs4838598	0.83[ASN][1000 genomes]
rs753342	0.94[ASN][1000 genomes]
rs9794032	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49652000-49673000	Weak transcription	HMEC	breast
2	chr10:49653000-49673600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr10:49655200-49677800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:49657800-49677600	Weak transcription	HSMMtube	muscle
5	chr10:49660400-49665400	Enhancers	Ovary	ovary
6	chr10:49661200-49669200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:49661400-49667600	Weak transcription	HSMM	muscle
8	chr10:49661600-49665600	Enhancers	Fetal Lung	lung
9	chr10:49661800-49665800	Enhancers	Fetal Heart	heart
10	chr10:49661800-49666800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:49661800-49668600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:49662000-49667400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr10:49662200-49671800	Weak transcription	Aorta	Aorta
14	chr10:49662400-49665400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr10:49662400-49665600	Enhancers	Fetal Muscle Leg	muscle
16	chr10:49662400-49672400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:49662600-49667400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:49662600-49671800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr10:49662800-49666600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:49663000-49665600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr10:49663000-49665600	Bivalent Enhancer	Placenta	Placenta
22	chr10:49663000-49665800	Bivalent Enhancer	Fetal Stomach	stomach
23	chr10:49663200-49668000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:49663400-49666400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:49663400-49667800	Enhancers	Primary hematopoietic stem cells	blood
26	chr10:49663400-49668000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:49663600-49666600	Enhancers	Fetal Thymus	thymus
28	chr10:49663800-49665800	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr10:49664000-49665800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:49664000-49665800	Enhancers	Brain Hippocampus Middle	brain
31	chr10:49664000-49665800	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr10:49664200-49665400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr10:49664200-49665400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr10:49664200-49665400	Enhancers	HUVEC	blood vessel
35	chr10:49664200-49665400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr10:49664200-49665600	Enhancers	Primary B cells from peripheral blood	blood
37	chr10:49664200-49665600	Enhancers	Brain Anterior Caudate	brain
38	chr10:49664200-49665800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:49664200-49665800	Enhancers	Brain Substantia Nigra	brain
40	chr10:49664400-49665400	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr10:49664400-49665400	Enhancers	Brain Angular Gyrus	brain
42	chr10:49664400-49665400	Enhancers	Spleen	Spleen
43	chr10:49664400-49665600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:49664400-49665600	Enhancers	Primary B cells from cord blood	blood
45	chr10:49664400-49665600	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr10:49664400-49665600	Enhancers	GM12878-XiMat	blood
47	chr10:49664400-49665600	Genic enhancers	NHLF	lung
48	chr10:49664400-49665800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr10:49664400-49665800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
50	chr10:49664400-49666200	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links