Variant report

Variant	rs10857609
Chromosome Location	chr10:49818441-49818442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49812643..49815279-chr10:49817934..49821454,3	K562	blood:
2	chr10:49698335..49701028-chr10:49818067..49819689,2	K562	blood:

Variant related genes	Relation type
ENSG00000128805	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10776630	0.84[ASN][1000 genomes]
rs10857612	0.84[ASN][1000 genomes]
rs34939981	0.85[ASN][1000 genomes]
rs7904633	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv540623	chr10:49805087-49819765	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv540624	chr10:49805087-49822634	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10857609	ARHGAP22	cis	Artery Tibial	GTEx

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49813400-49844200	Weak transcription	Pancreas	Pancrea
2	chr10:49813800-49819200	Enhancers	NHLF	lung
3	chr10:49813800-49819400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:49814000-49819400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:49814000-49820200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:49814200-49823400	Enhancers	NHDF-Ad	bronchial
7	chr10:49815000-49823000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:49815800-49822200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:49816000-49819400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:49816200-49819400	Weak transcription	Placenta	Placenta
11	chr10:49816200-49820600	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:49816400-49820400	Weak transcription	Brain Anterior Caudate	brain
13	chr10:49816600-49818800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr10:49816600-49818800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:49816600-49818800	Weak transcription	Brain Substantia Nigra	brain
16	chr10:49816800-49818600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:49816800-49819000	Enhancers	HSMM	muscle
18	chr10:49816800-49819200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr10:49816800-49819400	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr10:49816800-49820400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:49817400-49819400	Weak transcription	HMEC	breast
22	chr10:49817400-49820200	Weak transcription	HUVEC	blood vessel
23	chr10:49817400-49820600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:49817600-49818800	Weak transcription	HSMMtube	muscle
25	chr10:49817600-49819000	Weak transcription	Osteobl	bone
26	chr10:49817600-49820200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:49817600-49820200	Weak transcription	NH-A	brain
28	chr10:49818000-49819200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:49818000-49819200	Enhancers	GM12878-XiMat	blood
30	chr10:49818200-49819000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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