Variant report

Variant	rs10857633
Chromosome Location	chr10:49957408-49957409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10508907	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10776642	0.88[ASN][1000 genomes]
rs10857626	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10857632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101442	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12242299	0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17836423	0.85[ASN][1000 genomes]
rs1871599	0.97[ASN][1000 genomes]
rs1993986	0.90[ASN][1000 genomes]
rs2377627	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2377628	0.90[ASN][1000 genomes]
rs4838645	0.92[ASN][1000 genomes]
rs4838646	0.92[ASN][1000 genomes]
rs7076662	0.88[ASN][1000 genomes]
rs7099117	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49923400-49960200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:49952000-49960800	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr10:49953400-49960200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:49954200-49957600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:49955000-49958000	Strong transcription	Primary hematopoietic stem cells	blood
6	chr10:49955400-49957600	Genic enhancers	GM12878-XiMat	blood
7	chr10:49956200-49957800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:49956200-49958600	Enhancers	Adipose Nuclei	Adipose
9	chr10:49957000-49959000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr10:49957000-49961200	Strong transcription	Primary B cells from cord blood	blood
11	chr10:49957000-49962000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr10:49957200-49959000	Strong transcription	Primary B cells from peripheral blood	blood
13	chr10:49957400-49957600	Enhancers	Esophagus	oesophagus
14	chr10:49957400-49957600	ZNF genes & repeats	Pancreas	Pancrea
15	chr10:49957400-49958600	Enhancers	Lung	lung
16	chr10:49957400-49958600	Genic enhancers	Spleen	Spleen
17	chr10:49957400-49959000	Enhancers	Left Ventricle	heart
18	chr10:49957400-49960200	Strong transcription	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links