Variant report

Variant	rs10861008
Chromosome Location	chr12:103828570-103828571
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103826728..103828711-chr12:103887263..103890127,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179088	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10778246	0.81[ASN][1000 genomes]
rs10861005	0.83[ASN][1000 genomes]
rs10861014	0.86[ASN][1000 genomes]
rs11111572	0.80[ASN][1000 genomes]
rs11111579	0.80[ASN][1000 genomes]
rs11111582	0.83[ASN][1000 genomes]
rs7298211	0.80[ASN][1000 genomes]
rs7300757	0.83[ASN][1000 genomes]
rs7301460	0.81[ASN][1000 genomes]
rs7304308	0.83[ASN][1000 genomes]
rs7313920	0.83[ASN][1000 genomes]
rs7952759	0.82[ASN][1000 genomes]
rs7967288	0.83[ASN][1000 genomes]
rs7970043	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899478	chr12:103747515-103834275	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3338592	chr12:103817534-103849094	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103812800-103828800	Weak transcription	Primary B cells from cord blood	blood
2	chr12:103824200-103834400	Weak transcription	Primary T cells from cord blood	blood
3	chr12:103827200-103828600	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr12:103827400-103828800	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr12:103827600-103828800	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr12:103827800-103828600	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr12:103827800-103828800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr12:103827800-103834200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr12:103828000-103828800	Active TSS	H9 Cell Line	embryonic stem cell
10	chr12:103828200-103828600	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr12:103828200-103828600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr12:103828200-103828600	Active TSS	Placenta	Placenta
13	chr12:103828200-103828600	Active TSS	Rectal Mucosa Donor 31	rectum
14	chr12:103828200-103828600	Active TSS	HepG2	liver
15	chr12:103828200-103828800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr12:103828200-103828800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr12:103828200-103828800	Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr12:103828400-103828600	Active TSS	H1 Cell Line	embryonic stem cell
19	chr12:103828400-103828600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr12:103828400-103828600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr12:103828400-103828600	Active TSS	Dnd41	blood
22	chr12:103828400-103828800	Active TSS	Primary T cells fromperipheralblood	blood
23	chr12:103828400-103834400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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