Variant report

Variant	rs10861210
Chromosome Location	chr12:104752021-104752022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:104609104..104609875-chr12:104751756..104752541,2	K562	blood:
2	chr12:104594326..104595437-chr12:104751892..104752702,3	K562	blood:
3	chr12:104451267..104452091-chr12:104751976..104752804,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198431	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10861205	0.96[EUR][1000 genomes]
rs10861206	0.96[EUR][1000 genomes]
rs10861208	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10861209	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10861211	0.89[EUR][1000 genomes]
rs11112006	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11112007	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11609469	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17202520	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4436618	0.90[EUR][1000 genomes]
rs4964788	0.89[EUR][1000 genomes]
rs7953266	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7977410	0.94[EUR][1000 genomes]
rs7977553	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7978051	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899494	chr12:104561521-104806232	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1046606	chr12:104606617-104763734	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1038609	chr12:104613847-104764981	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv541587	chr12:104613847-104764981	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104721800-104760000	Weak transcription	Stomach Mucosa	stomach
2	chr12:104728800-104755000	Weak transcription	Fetal Heart	heart
3	chr12:104745000-104752200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr12:104745000-104761400	Weak transcription	Psoas Muscle	Psoas
5	chr12:104745400-104754000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr12:104745800-104754000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr12:104746000-104756800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr12:104746200-104754600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr12:104746200-104754800	Weak transcription	Hela-S3	cervix
10	chr12:104746200-104761200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr12:104746200-104763000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr12:104746400-104752200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr12:104747600-104752400	Weak transcription	NHEK	skin
14	chr12:104747800-104756000	Weak transcription	Aorta	Aorta
15	chr12:104748400-104761000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr12:104748600-104752800	Weak transcription	K562	blood
17	chr12:104749000-104753400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr12:104749000-104754000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr12:104749000-104754000	Weak transcription	Spleen	Spleen
20	chr12:104749000-104755000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr12:104749000-104758600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr12:104749000-104762800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr12:104749000-104763200	Weak transcription	Primary T cells from cord blood	blood
24	chr12:104749000-104765800	Weak transcription	Thymus	Thymus
25	chr12:104749200-104755200	Weak transcription	Left Ventricle	heart
26	chr12:104749200-104755200	Weak transcription	Osteobl	bone
27	chr12:104749200-104763000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr12:104749200-104763400	Weak transcription	HUVEC	blood vessel
29	chr12:104749600-104753000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr12:104749800-104769400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr12:104750400-104764800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr12:104750600-104754000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr12:104751400-104752200	Weak transcription	Placenta	Placenta
34	chr12:104751400-104752800	Genic enhancers	A549	lung
35	chr12:104751400-104761000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr12:104752000-104752200	Enhancers	Primary T helper cells PMA-I stimulated	--

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