Variant report

Variant	rs10861270
Chromosome Location	chr12:105094215-105094216
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11112173	0.80[CHB][hapmap];0.83[ASN][1000 genomes]
rs11610462	1.00[ASW][hapmap];0.90[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];0.83[JPT][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs312141	0.87[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.90[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1050695	chr12:105000981-105125161	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv541589	chr12:105000981-105125161	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv560051	chr12:105092213-105110554	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105067800-105096000	Weak transcription	K562	blood
2	chr12:105080400-105131800	Weak transcription	NHEK	skin
3	chr12:105083600-105103600	Weak transcription	Placenta	Placenta
4	chr12:105085000-105097800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr12:105086200-105096200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr12:105086400-105095600	Weak transcription	Fetal Heart	heart
7	chr12:105086400-105104400	Weak transcription	A549	lung
8	chr12:105086800-105103200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr12:105087800-105094600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr12:105087800-105095600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:105087800-105096200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr12:105089000-105105600	Weak transcription	Esophagus	oesophagus
13	chr12:105089600-105095400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr12:105089800-105096200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr12:105089800-105097400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr12:105090000-105095400	Weak transcription	Left Ventricle	heart
17	chr12:105090000-105095600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr12:105090000-105095600	Weak transcription	Right Ventricle	heart
19	chr12:105090000-105095800	Weak transcription	Fetal Stomach	stomach
20	chr12:105090000-105096000	Weak transcription	Adipose Nuclei	Adipose
21	chr12:105090000-105096200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr12:105090000-105096400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr12:105090000-105096400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr12:105090000-105096400	Weak transcription	Primary T cells from cord blood	blood
25	chr12:105090000-105096400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr12:105090000-105096400	Weak transcription	Fetal Muscle Leg	muscle
27	chr12:105090000-105097400	Weak transcription	Fetal Kidney	kidney
28	chr12:105090000-105097800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr12:105090000-105102000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr12:105090000-105104400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr12:105090000-105104600	Weak transcription	Fetal Brain Female	brain
32	chr12:105090000-105104600	Weak transcription	HMEC	breast
33	chr12:105090200-105113400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr12:105090400-105097000	Weak transcription	Fetal Thymus	thymus
35	chr12:105090400-105113400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr12:105090600-105095000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr12:105090600-105097800	Enhancers	NHDF-Ad	bronchial
38	chr12:105091800-105096200	Enhancers	NHLF	lung
39	chr12:105092200-105094400	Enhancers	Osteobl	bone
40	chr12:105092200-105095000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr12:105092200-105095400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr12:105092200-105095600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr12:105092200-105096600	Weak transcription	Spleen	Spleen
44	chr12:105092200-105104400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr12:105092400-105095200	Weak transcription	Gastric	stomach
46	chr12:105092400-105095200	Weak transcription	Right Atrium	heart
47	chr12:105092400-105095400	Weak transcription	Lung	lung
48	chr12:105093000-105096400	Weak transcription	Thymus	Thymus
49	chr12:105093200-105100800	Weak transcription	NH-A	brain
50	chr12:105093200-105103400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links