Variant report

Variant	rs10861554
Chromosome Location	chr12:106470169-106470170
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106468439..106470767-chr12:106471585..106474182,2	MCF-7	breast:
2	chr12:106468935..106470913-chr12:106531635..106534405,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000074590	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10746054	0.82[CHB][hapmap]
rs2436595	1.00[CHB][hapmap]
rs6539247	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106452800-106472200	Weak transcription	HMEC	breast
2	chr12:106452800-106474000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr12:106458200-106471800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr12:106458600-106476800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:106458800-106500200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr12:106461800-106499600	Weak transcription	Fetal Intestine Large	intestine
7	chr12:106462400-106482600	Weak transcription	Esophagus	oesophagus
8	chr12:106462600-106477400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr12:106462800-106477400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr12:106463600-106470800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr12:106463800-106477600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr12:106464000-106470200	Weak transcription	Lung	lung
13	chr12:106464600-106477400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr12:106464800-106472200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr12:106465000-106472200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr12:106465200-106487000	Weak transcription	Brain Germinal Matrix	brain
17	chr12:106466000-106470800	Weak transcription	Liver	Liver
18	chr12:106466200-106477600	Genic enhancers	HSMM	muscle
19	chr12:106466800-106471800	Weak transcription	Ovary	ovary
20	chr12:106467000-106477600	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr12:106467200-106470200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr12:106467800-106471000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr12:106468000-106470800	Enhancers	Fetal Lung	lung
24	chr12:106468000-106471200	Enhancers	Fetal Heart	heart
25	chr12:106468200-106470200	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr12:106468200-106470200	Enhancers	Fetal Kidney	kidney
27	chr12:106468200-106471400	Enhancers	Brain Angular Gyrus	brain
28	chr12:106468400-106470800	Enhancers	Fetal Stomach	stomach
29	chr12:106468400-106472000	Strong transcription	Adipose Nuclei	Adipose
30	chr12:106468400-106476000	Enhancers	Brain Substantia Nigra	brain
31	chr12:106468800-106470600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr12:106468800-106471800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr12:106468800-106471800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr12:106468800-106471800	Weak transcription	Brain Anterior Caudate	brain
35	chr12:106468800-106472000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr12:106468800-106472200	Weak transcription	Colon Smooth Muscle	Colon
37	chr12:106468800-106474000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr12:106468800-106474200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr12:106469000-106470200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr12:106469000-106470200	Weak transcription	Fetal Brain Female	brain
41	chr12:106469000-106470200	Weak transcription	Osteobl	bone
42	chr12:106469000-106470400	Weak transcription	NHDF-Ad	bronchial
43	chr12:106469000-106471000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr12:106469000-106471200	Weak transcription	Aorta	Aorta
45	chr12:106469000-106471400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr12:106469000-106471400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr12:106469000-106471800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr12:106469000-106472000	Weak transcription	NHLF	lung
49	chr12:106469000-106472200	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr12:106469000-106472200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links