Variant report

Variant	rs10862587
Chromosome Location	chr12:83515607-83515608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10862585	0.83[EUR][1000 genomes]
rs10862588	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11115601	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11115602	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11513936	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6539702	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6539703	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6539704	0.83[EUR][1000 genomes]
rs7954865	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7956999	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7960222	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521849	chr12:83013783-83991479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv559559	chr12:83505512-83765069	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:83492600-83515800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr12:83503600-83515800	Weak transcription	Fetal Brain Male	brain
3	chr12:83515000-83515800	Enhancers	Brain Angular Gyrus	brain
4	chr12:83515000-83515800	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr12:83515200-83515800	Enhancers	Brain Hippocampus Middle	brain
6	chr12:83515200-83515800	Enhancers	Brain Substantia Nigra	brain
7	chr12:83515200-83516000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:83515200-83516200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr12:83515400-83515800	Enhancers	Brain Anterior Caudate	brain
10	chr12:83515400-83516200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr12:83515400-83516600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr12:83515400-83516600	Enhancers	K562	blood
13	chr12:83515600-83516200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr12:83515600-83516400	Genic enhancers	Fetal Stomach	stomach
15	chr12:83515600-83516800	Flanking Active TSS	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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