Variant report

Variant	rs10862676
Chromosome Location	chr12:83872956-83872957
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10746287	0.92[ASN][1000 genomes]
rs10779004	0.92[ASN][1000 genomes]
rs10862673	0.99[ASN][1000 genomes]
rs10862688	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11115900	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1907075	1.00[ASN][1000 genomes]
rs2201718	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2403097	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3103477	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3103498	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3110203	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs324804	0.85[EUR][1000 genomes]
rs324805	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs370604	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs401687	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4084723	1.00[ASN][1000 genomes]
rs419637	0.85[EUR][1000 genomes]
rs439870	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs568559	0.85[EUR][1000 genomes]
rs7301606	0.98[ASN][1000 genomes]
rs7301730	0.91[ASN][1000 genomes]
rs7316174	0.96[ASN][1000 genomes]
rs7316185	0.99[ASN][1000 genomes]
rs9651972	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521849	chr12:83013783-83991479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1042674	chr12:83620899-83942628	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1037194	chr12:83859925-83910630	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
4	nsv1041589	chr12:83861093-83890080	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:83872000-83873000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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