Variant report

Variant	rs10863603
Chromosome Location	chr1:221510194-221510195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:221509927..221511974-chr3:24535188..24538078,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228791	Chromatin interaction
ENSG00000151090	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10863607	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11118694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11118698	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118703	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11118704	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12027086	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12033804	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12094380	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12410646	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12410731	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12744831	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4846341	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4846715	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221507200-221511000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:221507400-221510600	Enhancers	Colon Smooth Muscle	Colon
3	chr1:221507800-221511200	Enhancers	Fetal Lung	lung
4	chr1:221508600-221510200	Enhancers	Fetal Muscle Leg	muscle
5	chr1:221509000-221510400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:221509000-221510400	Enhancers	Rectal Smooth Muscle	rectum
7	chr1:221509200-221510200	Enhancers	Adipose Nuclei	Adipose
8	chr1:221509200-221510200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr1:221509200-221510600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:221509200-221510800	Weak transcription	Lung	lung
11	chr1:221509400-221510200	Enhancers	Psoas Muscle	Psoas
12	chr1:221509400-221510400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr1:221509400-221511400	Enhancers	Brain Angular Gyrus	brain
14	chr1:221509400-221511400	Enhancers	Brain Substantia Nigra	brain
15	chr1:221509600-221510200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:221509600-221510200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr1:221509600-221510200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:221509600-221510200	Enhancers	HSMMtube	muscle
19	chr1:221509600-221510400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:221509600-221510600	Enhancers	Brain Anterior Caudate	brain
21	chr1:221509600-221510600	Weak transcription	Fetal Kidney	kidney
22	chr1:221509600-221510800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr1:221509600-221511000	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr1:221509600-221511200	Enhancers	Brain Hippocampus Middle	brain
25	chr1:221509600-221511200	Enhancers	NHLF	lung
26	chr1:221509600-221512200	Weak transcription	Aorta	Aorta
27	chr1:221509800-221510200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr1:221509800-221510400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr1:221509800-221510600	Enhancers	Osteobl	bone
30	chr1:221509800-221510800	Enhancers	NHDF-Ad	bronchial
31	chr1:221510000-221510400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:221510000-221510600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr1:221510000-221511000	Weak transcription	Placenta	Placenta
34	chr1:221510000-221511400	Enhancers	Hela-S3	cervix

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