Variant report

Variant	rs10863811
Chromosome Location	chr1:210297597-210297598
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:141)

rs_ID	r²[population]
rs1028325	0.83[EUR][1000 genomes]
rs10746423	0.88[EUR][1000 genomes]
rs10779516	0.82[EUR][1000 genomes]
rs10779517	0.83[EUR][1000 genomes]
rs10779518	0.83[EUR][1000 genomes]
rs10779523	0.88[EUR][1000 genomes]
rs10779526	0.81[ASN][1000 genomes]
rs10863799	0.81[EUR][1000 genomes]
rs1099863	0.85[EUR][1000 genomes]
rs11119369	0.82[EUR][1000 genomes]
rs11119374	0.88[EUR][1000 genomes]
rs11119375	0.86[EUR][1000 genomes]
rs11119376	0.84[EUR][1000 genomes]
rs11119382	0.90[EUR][1000 genomes]
rs11119407	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11119409	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11119413	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11119414	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12042135	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12117075	0.83[ASN][1000 genomes]
rs126277	0.90[EUR][1000 genomes]
rs126278	0.89[EUR][1000 genomes]
rs1334567	0.90[EUR][1000 genomes]
rs1334568	0.90[EUR][1000 genomes]
rs1334569	0.94[EUR][1000 genomes]
rs1387933	0.84[EUR][1000 genomes]
rs1387934	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1490419	0.88[EUR][1000 genomes]
rs170552	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs170553	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs170555	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs170557	0.85[EUR][1000 genomes]
rs170558	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs183450	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs189000	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs189001	0.92[EUR][1000 genomes]
rs2046849	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2142861	0.88[EUR][1000 genomes]
rs2200970	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2205988	0.82[EUR][1000 genomes]
rs2205989	0.88[EUR][1000 genomes]
rs227168	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs227169	0.85[EUR][1000 genomes]
rs227170	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs227171	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs227172	0.85[EUR][1000 genomes]
rs227173	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs227174	0.85[EUR][1000 genomes]
rs227175	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs227176	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs227177	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs227178	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs227179	0.86[EUR][1000 genomes]
rs227181	0.85[EUR][1000 genomes]
rs227182	0.85[EUR][1000 genomes]
rs227183	0.91[EUR][1000 genomes]
rs227184	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs227186	0.92[EUR][1000 genomes]
rs227187	0.92[EUR][1000 genomes]
rs227188	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs227189	0.81[EUR][1000 genomes]
rs227190	0.92[EUR][1000 genomes]
rs227191	0.85[EUR][1000 genomes]
rs227193	0.85[EUR][1000 genomes]
rs227195	0.92[EUR][1000 genomes]
rs227196	0.85[EUR][1000 genomes]
rs227197	0.85[EUR][1000 genomes]
rs227200	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs227201	0.85[EUR][1000 genomes]
rs227202	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs227203	0.85[EUR][1000 genomes]
rs227204	0.85[EUR][1000 genomes]
rs227205	0.85[EUR][1000 genomes]
rs227206	0.85[EUR][1000 genomes]
rs227207	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs227209	0.86[EUR][1000 genomes]
rs227211	0.86[EUR][1000 genomes]
rs227216	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs227217	0.85[EUR][1000 genomes]
rs227218	0.85[EUR][1000 genomes]
rs227219	0.86[EUR][1000 genomes]
rs227221	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs227223	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs227224	0.85[EUR][1000 genomes]
rs227225	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs227226	0.83[EUR][1000 genomes]
rs227227	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs227228	0.85[EUR][1000 genomes]
rs227229	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs227230	0.85[EUR][1000 genomes]
rs227232	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2473073	0.81[EUR][1000 genomes]
rs2485893	0.81[ASN][1000 genomes]
rs2636373	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2636376	0.85[EUR][1000 genomes]
rs2743889	0.85[EUR][1000 genomes]
rs2743891	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4454550	0.80[EUR][1000 genomes]
rs4844947	0.91[EUR][1000 genomes]
rs4844948	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6540568	0.82[EUR][1000 genomes]
rs6540570	0.82[EUR][1000 genomes]
rs6540573	0.82[EUR][1000 genomes]
rs6540580	0.90[EUR][1000 genomes]
rs6656855	0.90[EUR][1000 genomes]
rs6657984	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6662445	0.82[EUR][1000 genomes]
rs6678081	0.83[EUR][1000 genomes]
rs6682334	0.92[EUR][1000 genomes]
rs6682546	0.82[EUR][1000 genomes]
rs6689456	0.91[EUR][1000 genomes]
rs701947	0.85[EUR][1000 genomes]
rs701948	0.85[EUR][1000 genomes]
rs724054	0.82[EUR][1000 genomes]
rs7513171	0.92[EUR][1000 genomes]
rs7514257	0.85[EUR][1000 genomes]
rs7516554	0.85[ASN][1000 genomes]
rs7519750	0.90[EUR][1000 genomes]
rs7525980	0.85[EUR][1000 genomes]
rs7530426	0.83[EUR][1000 genomes]
rs7547709	0.85[EUR][1000 genomes]
rs7548989	0.89[EUR][1000 genomes]
rs7549523	0.82[EUR][1000 genomes]
rs846545	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs846546	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs846548	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs846549	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs846550	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs846551	0.85[EUR][1000 genomes]
rs846552	0.85[EUR][1000 genomes]
rs846553	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs846554	0.85[EUR][1000 genomes]
rs846555	0.85[EUR][1000 genomes]
rs846556	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs846557	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs846559	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs860155	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9429829	0.81[EUR][1000 genomes]
rs9429830	0.82[EUR][1000 genomes]
rs9430026	0.88[EUR][1000 genomes]
rs9659395	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv873140	chr1:210068117-210335644	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv873144	chr1:210252522-210347417	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv818800	chr1:210258653-210304319	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210283000-210298000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:210295600-210298600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:210295800-210298000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr1:210296200-210299800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:210296600-210298000	Enhancers	HMEC	breast
6	chr1:210296600-210298400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:210296600-210298800	Enhancers	NH-A	brain
8	chr1:210296600-210299400	Enhancers	NHDF-Ad	bronchial
9	chr1:210296800-210298000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:210296800-210298200	Enhancers	NHEK	skin
11	chr1:210297000-210297600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:210297200-210298000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr1:210297200-210298200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr1:210297200-210298200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:210297200-210298200	Bivalent Enhancer	HUVEC	blood vessel
16	chr1:210297200-210298400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:210297400-210298000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:210297400-210298000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:210297400-210298200	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links