Variant report

Variant	rs10863826
Chromosome Location	chr1:210586522-210586523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210580604..210582108-chr1:210584910..210587345,2	MCF-7	breast:
2	chr1:210546163..210547950-chr1:210586402..210589713,3	K562	blood:
3	chr1:210565840..210568269-chr1:210585284..210587364,2	K562	blood:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11119486	0.84[ASN][1000 genomes]
rs12738703	0.82[ASN][1000 genomes]
rs2357587	0.81[ASN][1000 genomes]
rs4601592	0.82[ASN][1000 genomes]
rs6682398	0.84[ASN][1000 genomes]
rs926579	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756883	chr1:210579523-210620779	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv2758995	chr1:210579523-210620779	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart
2	chr1:210570200-210594000	Weak transcription	Fetal Lung	lung
3	chr1:210571200-210592400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:210571400-210591400	Weak transcription	Ovary	ovary
5	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:210573600-210592400	Weak transcription	Fetal Intestine Small	intestine
7	chr1:210573800-210592200	Weak transcription	Primary T cells from cord blood	blood
8	chr1:210573800-210594400	Weak transcription	Spleen	Spleen
9	chr1:210574000-210586600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr1:210574400-210587400	Weak transcription	Colon Smooth Muscle	Colon
11	chr1:210574400-210592200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:210574400-210594400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr1:210574400-210595200	Weak transcription	Right Ventricle	heart
14	chr1:210577400-210591600	Weak transcription	Thymus	Thymus
15	chr1:210581200-210586600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:210581200-210590000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:210581200-210592400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:210583400-210592400	Weak transcription	Liver	Liver
19	chr1:210584400-210587800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr1:210584400-210591600	Weak transcription	Esophagus	oesophagus
21	chr1:210584600-210587200	ZNF genes & repeats	HSMMtube	muscle
22	chr1:210585000-210586800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:210585200-210593600	Weak transcription	Fetal Stomach	stomach
24	chr1:210586400-210586600	Weak transcription	Lung	lung
25	chr1:210586400-210610800	Weak transcription	Aorta	Aorta

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