Variant report

Variant	rs10863835
Chromosome Location	chr1:210656047-210656048
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210650763..210653527-chr1:210655583..210657654,2	MCF-7	breast:
2	chr1:210545486..210548370-chr1:210655740..210658368,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12564505	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12755271	1.00[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4376	chr1:210627620-210672326	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210639400-210668200	Weak transcription	Primary T cells from cord blood	blood
2	chr1:210640000-210660400	Weak transcription	Aorta	Aorta
3	chr1:210643200-210674000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:210648000-210656400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr1:210648400-210658800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:210648800-210660400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:210653800-210678800	Weak transcription	HSMM	muscle
8	chr1:210654400-210659000	Weak transcription	HSMMtube	muscle
9	chr1:210654800-210657000	Enhancers	Brain Angular Gyrus	brain
10	chr1:210655000-210658800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:210655200-210656400	Enhancers	Brain Anterior Caudate	brain
12	chr1:210655200-210656800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:210655200-210657600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:210655200-210658000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:210655400-210656400	Enhancers	Brain Hippocampus Middle	brain
16	chr1:210655400-210656600	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr1:210655400-210656800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr1:210655400-210656800	Enhancers	Brain Germinal Matrix	brain
19	chr1:210655400-210657000	Enhancers	Brain Substantia Nigra	brain
20	chr1:210655800-210656400	Weak transcription	Fetal Heart	heart
21	chr1:210656000-210656800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:210656000-210657000	Enhancers	Brain Cingulate Gyrus	brain
23	chr1:210656000-210657200	Enhancers	HUES64 Cell Line	embryonic stem cell

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