Variant report
| Variant | rs10863895 |
|---|---|
| Chromosome Location | chr1:211615094-211615095 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10449313 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1055565 | 0.87[ASN][1000 genomes] |
| rs1084981 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10863888 | 0.81[EUR][1000 genomes] |
| rs1663522 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1777827 | 0.84[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2063569 | 0.82[ASN][1000 genomes] |
| rs2798559 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2920908 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2920911 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3002258 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4951523 | 0.82[EUR][1000 genomes] |
| rs4951741 | 0.80[EUR][1000 genomes] |
| rs4951742 | 0.80[EUR][1000 genomes] |
| rs6703361 | 0.81[EUR][1000 genomes] |
| rs7550702 | 0.82[EUR][1000 genomes] |
| rs784369 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs784379 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs784382 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs784383 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs784385 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs784389 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv945612 | chr1:211593276-211615726 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:211612200-211617400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
