Variant report

Variant	rs10864090
Chromosome Location	chr1:214420834-214420835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10494968	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10735512	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1550495	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655241	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4655322	0.85[ASN][1000 genomes]
rs4655323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655324	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6665132	0.85[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214412200-214421000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:214417800-214432800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:214419200-214421200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:214419400-214421000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:214420600-214421000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:214420800-214422400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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