Variant report

Variant	rs10864900
Chromosome Location	chr2:112929485-112929486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10189625	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10864899	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13419623	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4848279	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4849047	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874863	chr2:112591224-113157344	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv874864	chr2:112617280-113104142	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv874865	chr2:112623098-113049274	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	esv3422414	chr2:112883450-113200285	Strong transcription Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv874866	chr2:112906599-112991098	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv582703	chr2:112920219-113100014	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:112896400-112934600	Weak transcription	Aorta	Aorta
2	chr2:112900600-112931400	Weak transcription	Fetal Lung	lung
3	chr2:112914600-112972800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:112918400-112939200	Weak transcription	Gastric	stomach
5	chr2:112918600-112939200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:112919000-112939000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr2:112919600-112933400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr2:112919800-112933200	Weak transcription	Thymus	Thymus
9	chr2:112924600-112931200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr2:112925000-112931600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr2:112925200-112930800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr2:112925200-112932800	Weak transcription	Fetal Thymus	thymus
13	chr2:112926000-112937000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr2:112926400-112931200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr2:112926400-112932800	Weak transcription	Fetal Stomach	stomach
16	chr2:112926600-112931200	Weak transcription	Fetal Muscle Leg	muscle
17	chr2:112926600-112934000	Weak transcription	NHDF-Ad	bronchial
18	chr2:112928800-112930600	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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