Variant report

Variant	rs10865119
Chromosome Location	chr2:37245408-37245409
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10084334	0.88[ASN][1000 genomes]
rs10167385	0.88[ASN][1000 genomes]
rs10176270	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10192867	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10207971	0.93[EUR][1000 genomes]
rs1105014	0.87[ASN][1000 genomes]
rs11124556	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11682782	0.81[ASN][1000 genomes]
rs11684340	0.84[ASN][1000 genomes]
rs11895180	0.81[ASN][1000 genomes]
rs12104444	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12105601	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13394987	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2013223	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2110992	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2110996	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2110998	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2247357	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2247935	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2287107	0.94[EUR][1000 genomes]
rs2287108	0.95[EUR][1000 genomes]
rs2372913	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2372914	0.91[ASN][1000 genomes]
rs2540998	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2541004	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2541007	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2691123	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2706809	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4255943	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4606899	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4670181	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4670643	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4670647	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4670650	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58717433	0.80[EUR][1000 genomes]
rs61380056	0.81[ASN][1000 genomes]
rs62133071	0.81[ASN][1000 genomes]
rs62133078	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6544050	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6709006	0.81[ASN][1000 genomes]
rs6712162	0.81[ASN][1000 genomes]
rs6733188	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6739171	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9309001	0.80[ASN][1000 genomes]
rs9636429	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv873879	chr2:37200033-37299145	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv581471	chr2:37213186-37257386	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv581472	chr2:37235324-37291320	Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv1820206	chr2:37236821-37277811	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37195200-37252800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:37195400-37248600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:37209000-37290200	Weak transcription	Small Intestine	intestine
4	chr2:37214200-37248400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:37219200-37256400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr2:37221000-37307600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:37223400-37282600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr2:37223400-37300400	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr2:37224000-37256000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr2:37224000-37270600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:37224600-37248200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr2:37226800-37256600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:37227800-37246000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:37228000-37247200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:37228600-37267000	Weak transcription	Stomach Mucosa	stomach
16	chr2:37229800-37251200	Weak transcription	K562	blood
17	chr2:37230400-37245600	Weak transcription	Spleen	Spleen
18	chr2:37230400-37248400	Weak transcription	Right Ventricle	heart
19	chr2:37230800-37248200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr2:37232600-37248200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr2:37232800-37248400	Weak transcription	Psoas Muscle	Psoas
22	chr2:37232800-37251000	Weak transcription	Brain Substantia Nigra	brain
23	chr2:37233000-37245600	Weak transcription	Pancreas	Pancrea
24	chr2:37233000-37253000	Weak transcription	NHEK	skin
25	chr2:37235000-37248400	Weak transcription	Aorta	Aorta
26	chr2:37237600-37255400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr2:37238000-37248200	Strong transcription	Adipose Nuclei	Adipose
28	chr2:37238200-37247600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr2:37238200-37255200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr2:37238400-37247400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr2:37238400-37248400	Weak transcription	Right Atrium	heart
32	chr2:37238400-37260800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr2:37238800-37251800	Strong transcription	Placenta	Placenta
34	chr2:37239200-37247600	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr2:37239200-37248000	Strong transcription	Fetal Muscle Trunk	muscle
36	chr2:37239600-37246200	Strong transcription	Stomach Smooth Muscle	stomach
37	chr2:37239800-37247200	Strong transcription	Fetal Lung	lung
38	chr2:37240200-37260800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr2:37240400-37246600	Weak transcription	HSMMtube	muscle
40	chr2:37240400-37254200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr2:37240400-37304800	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr2:37240600-37245600	Weak transcription	Fetal Brain Male	brain
43	chr2:37240600-37246400	Weak transcription	HSMM	muscle
44	chr2:37240600-37249800	Strong transcription	Duodenum Mucosa	Duodenum
45	chr2:37240600-37306000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr2:37240800-37281800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr2:37240800-37306400	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr2:37240800-37307000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr2:37241000-37272600	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr2:37241200-37245600	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links