Variant report

Variant	rs10865923
Chromosome Location	chr3:42812639-42812640
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10461012	0.87[EUR][1000 genomes]
rs10865920	0.89[EUR][1000 genomes]
rs10865921	0.89[EUR][1000 genomes]
rs11129969	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11129970	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11709054	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11709500	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11710120	0.93[ASN][1000 genomes]
rs11713172	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11717346	0.93[ASN][1000 genomes]
rs11915803	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17074778	0.89[EUR][1000 genomes]
rs17238314	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17238798	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2240861	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs339664	0.99[ASN][1000 genomes]
rs339667	0.99[ASN][1000 genomes]
rs339668	0.99[ASN][1000 genomes]
rs339676	0.99[ASN][1000 genomes]
rs34110933	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4682856	0.91[EUR][1000 genomes]
rs4682857	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4683336	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55884426	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55904344	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58045017	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59478814	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59713146	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60049195	0.89[EUR][1000 genomes]
rs60176972	0.83[EUR][1000 genomes]
rs62246603	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62246606	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62246629	0.81[EUR][1000 genomes]
rs62246635	0.90[EUR][1000 genomes]
rs62246636	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62250113	0.90[EUR][1000 genomes]
rs62250114	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6442057	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6764909	0.86[ASN][1000 genomes]
rs7634876	0.81[ASN][1000 genomes]
rs9836162	0.89[EUR][1000 genomes]
rs9837412	0.81[EUR][1000 genomes]
rs9838388	0.82[EUR][1000 genomes]
rs9880635	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013578	chr3:42747858-42817321	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv999713	chr3:42749022-42817321	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv1846968	chr3:42787469-42832979	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42795600-42814000	Weak transcription	Gastric	stomach
2	chr3:42795600-42814400	Weak transcription	Aorta	Aorta
3	chr3:42803000-42814200	Weak transcription	Right Atrium	heart
4	chr3:42804200-42814200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:42805000-42813800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:42807400-42813400	Weak transcription	Primary B cells from cord blood	blood
7	chr3:42807400-42814000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:42808000-42814000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:42808000-42814200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:42808800-42813200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr3:42811200-42814000	Weak transcription	Spleen	Spleen
12	chr3:42811600-42814200	Weak transcription	Lung	lung
13	chr3:42812200-42813800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:42812400-42813000	Enhancers	HepG2	liver
15	chr3:42812600-42813800	Enhancers	Primary neutrophils fromperipheralblood	blood

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