Variant report

Variant	rs10866426
Chromosome Location	chr4:56506541-56506542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:56500921..56503326-chr4:56505763..56509712,4	K562	blood:

Variant related genes	Relation type
ENSG00000109255	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10018565	0.90[EUR][1000 genomes]
rs10022874	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1027109	0.90[EUR][1000 genomes]
rs13139886	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1387198	0.90[EUR][1000 genomes]
rs1471981	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1552524	0.90[EUR][1000 genomes]
rs1844221	0.81[AFR][1000 genomes]
rs1906674	0.90[EUR][1000 genomes]
rs1906678	0.90[EUR][1000 genomes]
rs1963566	0.90[EUR][1000 genomes]
rs2101473	0.90[EUR][1000 genomes]
rs2101474	0.90[EUR][1000 genomes]
rs2412667	0.90[EUR][1000 genomes]
rs4865019	0.90[EUR][1000 genomes]
rs59494560	0.90[EUR][1000 genomes]
rs61541312	1.00[EUR][1000 genomes]
rs6554294	0.90[EUR][1000 genomes]
rs6554295	0.90[EUR][1000 genomes]
rs6554296	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6843720	0.90[EUR][1000 genomes]
rs7657199	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7659330	0.90[EUR][1000 genomes]
rs7662646	0.90[EUR][1000 genomes]
rs7681959	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs901946	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv998179	chr4:56425126-56694339	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv932636	chr4:56438618-56667329	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879021	chr4:56482750-56648713	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3395811	chr4:56486113-56514675	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56504600-56507000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:56505400-56507200	Enhancers	K562	blood

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