Variant report

Variant	rs10867234
Chromosome Location	chr9:71881378-71881379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10122361	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10283800	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10283841	0.92[ASN][1000 genomes]
rs10746576	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10780246	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10780251	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10780256	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10780257	0.91[EUR][1000 genomes]
rs10867235	0.86[ASN][1000 genomes]
rs10867253	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10867254	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11137816	0.81[ASN][1000 genomes]
rs11137822	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11137835	0.80[ASN][1000 genomes]
rs1538580	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1538582	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1890632	0.93[EUR][1000 genomes]
rs1890639	0.93[EUR][1000 genomes]
rs1962602	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2039786	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2039787	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2039788	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2095875	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2105214	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2309419	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2871230	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3939631	0.82[ASN][1000 genomes]
rs4069743	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4379507	0.83[ASN][1000 genomes]
rs4744865	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56168730	0.93[ASN][1000 genomes]
rs59310084	0.82[ASN][1000 genomes]
rs6559403	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6559404	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7018704	0.82[AFR][1000 genomes]
rs7020270	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7026817	0.82[ASN][1000 genomes]
rs7030471	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7034640	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7038651	0.83[ASN][1000 genomes]
rs73452956	0.83[AFR][1000 genomes]
rs7859931	0.91[ASN][1000 genomes]
rs7867704	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7868867	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv931684	chr9:71417110-71957723	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1035823	chr9:71465139-71901672	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv466396	chr9:71471912-71935577	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv614548	chr9:71471912-71935577	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv1035477	chr9:71511927-71959487	Enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv893416	chr9:71597840-71888601	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv831610	chr9:71846941-72016835	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
11	esv1796249	chr9:71862129-71911566	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71869400-71887200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:71869800-71883000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:71872400-71883600	Weak transcription	Lung	lung
4	chr9:71873000-71888400	Weak transcription	Right Atrium	heart
5	chr9:71879600-71881600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr9:71879800-71888400	Weak transcription	Left Ventricle	heart
7	chr9:71880600-71881400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:71880600-71881600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr9:71880800-71881600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr9:71880800-71881600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:71881000-71881400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr9:71881000-71881400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr9:71881000-71881600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:71881000-71881600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr9:71881000-71881600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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