Variant report

Variant	rs10867927
Chromosome Location	chr9:85632346-85632347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85630260..85633245-chr9:85676968..85678631,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165105	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1010480	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10115768	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10116254	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10121204	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10121376	0.80[EUR][1000 genomes]
rs10121395	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10126033	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10746694	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10780563	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10780564	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10780565	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10780567	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10867924	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10867925	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10867926	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10867928	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10867929	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13302349	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1393562	0.92[AMR][1000 genomes]
rs1393563	0.85[AMR][1000 genomes]
rs1393564	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1502682	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1502685	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1546315	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1546316	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1546317	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1580881	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1976455	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2279814	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs29001503	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4146960	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4146961	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4301515	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4348583	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4628323	0.92[AMR][1000 genomes]
rs4877244	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6559693	0.81[ASN][1000 genomes]
rs6559694	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6559695	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7019227	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7024864	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7029133	0.86[AMR][1000 genomes]
rs7045914	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7847666	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7854101	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7866666	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7867614	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7872982	0.82[ASN][1000 genomes]
rs952450	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs998119	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050771	chr9:85416931-85643417	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85603200-85643800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr9:85610800-85642000	Weak transcription	Fetal Intestine Large	intestine
3	chr9:85613600-85643400	Weak transcription	Colonic Mucosa	Colon
4	chr9:85617200-85645800	Weak transcription	Stomach Mucosa	stomach
5	chr9:85621000-85645400	Weak transcription	Gastric	stomach
6	chr9:85623600-85634800	Weak transcription	Pancreas	Pancrea
7	chr9:85623600-85643200	Weak transcription	Fetal Intestine Small	intestine
8	chr9:85628400-85634800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr9:85628600-85643400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:85629000-85636000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr9:85629000-85638800	Weak transcription	Fetal Stomach	stomach
12	chr9:85630000-85641600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:85630600-85633000	Strong transcription	Cortex derived primary cultured neurospheres	brain

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