Variant report

Variant	rs10868886
Chromosome Location	chr9:73396261-73396262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10780961	0.83[ASN][1000 genomes]
rs10868881	0.81[ASN][1000 genomes]
rs11142554	0.83[ASN][1000 genomes]
rs11142556	0.82[ASN][1000 genomes]
rs11142557	0.82[ASN][1000 genomes]
rs11142558	0.82[ASN][1000 genomes]
rs11142565	0.83[ASN][1000 genomes]
rs11142569	0.83[ASN][1000 genomes]
rs11142580	0.81[ASN][1000 genomes]
rs11142584	0.81[ASN][1000 genomes]
rs11142590	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1156243	0.81[ASN][1000 genomes]
rs11795184	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12552891	0.83[ASN][1000 genomes]
rs12684992	0.81[ASN][1000 genomes]
rs13293360	0.81[ASN][1000 genomes]
rs13298241	0.81[ASN][1000 genomes]
rs13298973	0.81[ASN][1000 genomes]
rs1571329	0.81[ASN][1000 genomes]
rs1571330	0.83[ASN][1000 genomes]
rs17553311	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17553491	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1831144	0.81[ASN][1000 genomes]
rs1854273	0.83[ASN][1000 genomes]
rs1983942	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1983943	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs34009627	0.83[ASN][1000 genomes]
rs34806905	0.83[ASN][1000 genomes]
rs35561553	0.93[ASN][1000 genomes]
rs4265245	0.81[ASN][1000 genomes]
rs55993605	0.81[ASN][1000 genomes]
rs56201767	0.83[ASN][1000 genomes]
rs56335964	0.80[ASN][1000 genomes]
rs6560152	0.91[ASN][1000 genomes]
rs7847652	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7847799	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7863903	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases
2	esv1381611	chr9:73396260-73396261	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73375600-73398400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:73390600-73399600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:73392000-73404600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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