Variant report

Variant	rs10869709
Chromosome Location	chr9:78758310-78758311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10869710	0.93[ASN][1000 genomes]
rs11144765	0.98[ASN][1000 genomes]
rs11144767	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12553135	0.81[AMR][1000 genomes]
rs17776673	0.80[AMR][1000 genomes]
rs6560504	0.88[ASN][1000 genomes]
rs7869196	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831627	chr9:78651134-78817669	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv893474	chr9:78753324-78784325	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv893475	chr9:78753324-78817288	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78688000-78774000	Weak transcription	Left Ventricle	heart
2	chr9:78724000-78767000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:78725400-78766400	Weak transcription	Thymus	Thymus
4	chr9:78745400-78758800	Weak transcription	Primary T cells from cord blood	blood
5	chr9:78748400-78769200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr9:78751600-78773200	Weak transcription	Fetal Stomach	stomach
7	chr9:78752200-78772000	Weak transcription	Fetal Intestine Large	intestine
8	chr9:78752400-78773400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:78753400-78760800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:78753600-78765000	Weak transcription	Fetal Intestine Small	intestine
11	chr9:78753600-78766800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr9:78753600-78773400	Weak transcription	Ovary	ovary
13	chr9:78757200-78776400	Weak transcription	Psoas Muscle	Psoas
14	chr9:78758000-78758600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr9:78758000-78759600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr9:78758200-78759600	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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