Variant report

Variant	rs10869787
Chromosome Location	chr9:79225235-79225236
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10869786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11144971	1.00[ASN][1000 genomes]
rs11144973	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11144974	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11144975	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11144976	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11144977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11144978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79211000-79229200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:79215400-79229400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:79216000-79226600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:79218800-79227200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:79220200-79227400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr9:79221000-79229400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:79221200-79229800	Weak transcription	GM12878-XiMat	blood
8	chr9:79222200-79225600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr9:79222200-79225600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr9:79222400-79225600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr9:79223600-79229400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:79223600-79230200	Weak transcription	Primary B cells from cord blood	blood
13	chr9:79223800-79225400	Enhancers	Colon Smooth Muscle	Colon
14	chr9:79224000-79225400	Enhancers	Brain Hippocampus Middle	brain
15	chr9:79224000-79225600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:79224000-79226800	Active TSS	Fetal Intestine Large	intestine
17	chr9:79224200-79225600	Enhancers	Fetal Lung	lung
18	chr9:79224200-79225800	Enhancers	Small Intestine	intestine
19	chr9:79224200-79229000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr9:79224400-79225400	Enhancers	Fetal Muscle Leg	muscle
21	chr9:79224400-79225600	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr9:79224400-79225800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:79224400-79225800	Active TSS	Fetal Intestine Small	intestine
24	chr9:79224400-79229600	Enhancers	Stomach Mucosa	stomach
25	chr9:79224600-79225400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr9:79224600-79225600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:79224600-79225600	Enhancers	NHDF-Ad	bronchial
28	chr9:79224600-79225800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:79224600-79225800	Enhancers	Adipose Nuclei	Adipose
30	chr9:79224600-79239000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr9:79224600-79244400	Weak transcription	Brain Angular Gyrus	brain
32	chr9:79224800-79225400	Flanking Active TSS	Duodenum Mucosa	Duodenum
33	chr9:79224800-79225600	Enhancers	HSMMtube	muscle
34	chr9:79224800-79228400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr9:79224800-79228800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr9:79224800-79239600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr9:79225000-79225600	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr9:79225000-79225600	Enhancers	Osteobl	bone
39	chr9:79225000-79225800	Enhancers	HSMM	muscle
40	chr9:79225000-79227200	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr9:79225000-79227800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:79225200-79225400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr9:79225200-79225600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr9:79225200-79225600	Weak transcription	Gastric	stomach
45	chr9:79225200-79239000	Weak transcription	Brain Anterior Caudate	brain
46	chr9:79225200-79239600	Weak transcription	Brain Substantia Nigra	brain

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