Variant report

Variant	rs10869796
Chromosome Location	chr9:79306790-79306791
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10512061	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11145010	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1974326	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2113942	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3739521	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893481	chr9:79304043-79348193	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79266400-79306800	Weak transcription	Fetal Stomach	stomach
2	chr9:79300400-79332200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:79302600-79306800	Enhancers	Fetal Intestine Large	intestine
4	chr9:79302600-79306800	Enhancers	Fetal Intestine Small	intestine
5	chr9:79303400-79306800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:79303800-79306800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:79304000-79306800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:79304200-79306800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:79304200-79306800	Weak transcription	HMEC	breast
10	chr9:79304200-79307800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:79305000-79306800	Enhancers	Fetal Lung	lung
12	chr9:79305000-79307600	Weak transcription	Aorta	Aorta
13	chr9:79305200-79306800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
14	chr9:79305200-79306800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:79305200-79307200	Enhancers	Colon Smooth Muscle	Colon
16	chr9:79305200-79307600	Enhancers	Stomach Mucosa	stomach
17	chr9:79305400-79306800	Enhancers	Small Intestine	intestine
18	chr9:79305600-79306800	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr9:79305600-79306800	Genic enhancers	HSMM	muscle
20	chr9:79305800-79306800	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr9:79306000-79306800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:79306000-79306800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:79306000-79306800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr9:79306000-79307200	Active TSS	Brain Angular Gyrus	brain
25	chr9:79306000-79307200	Enhancers	Lung	lung
26	chr9:79306000-79307600	Active TSS	Fetal Brain Female	brain
27	chr9:79306000-79307800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr9:79306000-79307800	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr9:79306000-79307800	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr9:79306200-79306800	Active TSS	Fetal Muscle Leg	muscle
31	chr9:79306200-79306800	Enhancers	HSMMtube	muscle
32	chr9:79306200-79307000	Active TSS	Fetal Thymus	thymus
33	chr9:79306400-79306800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr9:79306400-79306800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr9:79306400-79306800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:79306400-79307200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr9:79306400-79307200	Enhancers	Colonic Mucosa	Colon
38	chr9:79306400-79307400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
39	chr9:79306400-79307400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
40	chr9:79306400-79307400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
41	chr9:79306400-79307400	Active TSS	Fetal Brain Male	brain
42	chr9:79306400-79307400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
43	chr9:79306600-79306800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
44	chr9:79306600-79306800	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr9:79306600-79306800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
46	chr9:79306600-79306800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
47	chr9:79306600-79306800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
48	chr9:79306600-79306800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr9:79306600-79306800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr9:79306600-79306800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood

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