Variant report

Variant	rs10870159
Chromosome Location	chr9:139887042-139887043
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:261)
CpG islands
(count:0)
Chromatin interactive
region (count:42)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:261 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr9:139886600-139887498	A549	lung:	n/a	n/a
2	MAX	chr9:139887008-139887345	H1-hESC	embryonic stem cell:	n/a	n/a
3	CHD2	chr9:139886889-139887276	GM12878	blood:	n/a	n/a
4	POLR2A	chr9:139886701-139887207	A549	lung:	n/a	n/a
5	POLR2A	chr9:139886384-139887399	GM12892	blood:	n/a	n/a
6	HEY1	chr9:139886771-139887217	K562	blood:	n/a	n/a
7	POLR2A	chr9:139886814-139887054	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr9:139886237-139887298	K562	blood:	n/a	n/a
9	MXI1	chr9:139886529-139887407	Hela-S3	cervix:	n/a	n/a
10	POLR2A	chr9:139886215-139887178	K562	blood:	n/a	n/a
11	NFYA	chr9:139886483-139887294	Hela-S3	cervix:	n/a	n/a
12	MAX	chr9:139886739-139887290	A549	lung:	n/a	n/a
13	ZKSCAN1	chr9:139886893-139887531	Hela-S3	cervix:	n/a	n/a
14	POLR2A	chr9:139886242-139887195	K562	blood:	n/a	n/a
15	POLR2A	chr9:139886111-139887405	PFSK-1	brain:	n/a	n/a
16	MAX	chr9:139886694-139887490	H1-hESC	embryonic stem cell:	n/a	n/a
17	POLR2A	chr9:139886710-139887215	PANC-1	pancreas:	n/a	n/a
18	GTF2F1	chr9:139887037-139887288	Hela-S3	cervix:	n/a	n/a
19	MAX	chr9:139886678-139887529	ECC-1	luminal epithelium:	n/a	n/a
20	POLR2A	chr9:139886758-139887223	HUVEC	blood vessel:	n/a	n/a
21	YY1	chr9:139886690-139887147	GM12878	blood:	n/a	n/a
22	MXI1	chr9:139886547-139888559	IMR90	lung:	n/a	n/a
23	MAX	chr9:139886688-139887425	HepG2	liver:	n/a	n/a
24	CREB1	chr9:139886188-139887124	A549	lung:	n/a	n/a
25	POLR2A	chr9:139886347-139887365	Hela-S3	cervix:	n/a	n/a
26	POLR2A	chr9:139886790-139887130	HepG2	liver:	n/a	n/a
27	MYC	chr9:139886773-139887360	MCF-7	breast:	n/a	n/a
28	MAX	chr9:139886710-139887279	K562	blood:	n/a	n/a
29	MXI1	chr9:139886759-139887258	HepG2	liver:	n/a	n/a
30	MAX	chr9:139886702-139887416	SK-N-SH	brain:	n/a	n/a
31	POLR2A	chr9:139886235-139887622	Hela-S3	cervix:	n/a	n/a
32	CREB1	chr9:139886668-139887482	GM12878	blood:	n/a	n/a
33	POLR2A	chr9:139886467-139887448	GM19193	blood:	n/a	n/a
34	RCOR1	chr9:139886150-139887391	Hela-S3	cervix:	n/a	n/a
35	POLR2A	chr9:139886681-139887670	SK-N-MC	brain:	n/a	n/a
36	CHD2	chr9:139886300-139887285	Hela-S3	cervix:	n/a	chr9:139886584-139886594
37	POLR2A	chr9:139886293-139892292	MCF-7	breast:	n/a	n/a
38	YY1	chr9:139886689-139887314	ECC-1	luminal epithelium:	n/a	n/a
39	ELF1	chr9:139886129-139887539	GM12878	blood:	n/a	chr9:139886341-139886350 chr9:139886792-139886805 chr9:139886339-139886352 chr9:139886434-139886446 chr9:139886788-139886800 chr9:139886440-139886452
40	ELF1	chr9:139886193-139887119	K562	blood:	n/a	chr9:139886341-139886350 chr9:139886792-139886805 chr9:139886339-139886352 chr9:139886434-139886446 chr9:139886788-139886800 chr9:139886440-139886452
41	POLR2A	chr9:139886522-139887629	HepG2	liver:	n/a	n/a
42	ZBTB7A	chr9:139886679-139887673	ECC-1	luminal epithelium:	n/a	n/a
43	TCF12	chr9:139886032-139887435	A549	lung:	n/a	n/a
44	MAX	chr9:139886736-139887386	H1-hESC	embryonic stem cell:	n/a	n/a
45	POLR2A	chr9:139886912-139887258	HepG2	liver:	n/a	n/a
46	POLR2A	chr9:139886705-139887510	Hela-S3	cervix:	n/a	n/a
47	HEY1	chr9:139886730-139887320	K562	blood:	n/a	n/a
48	MTA3	chr9:139886812-139887715	GM12878	blood:	n/a	n/a
49	SIN3AK20	chr9:139885974-139887652	MCF-7	breast:	n/a	n/a
50	MYC	chr9:139886205-139887317	K562	blood:	n/a	n/a

No data

(count:42 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:139885963..139888919-chr9:140114958..140117782,3	MCF-7	breast:
2	chr9:139884297..139893800-chr9:139910309..139932457,68	MCF-7	breast:
3	chr9:139729277..139730808-chr9:139886457..139887964,2	K562	blood:
4	chr9:139692613..139695427-chr9:139886563..139888609,3	MCF-7	breast:
5	chr9:139604913..139608452-chr9:139885394..139887895,3	K562	blood:
6	chr9:139885639..139888305-chr9:139927230..139929491,2	MCF-7	breast:
7	chr9:139884966..139890244-chr9:139901536..139904813,6	K562	blood:
8	chr9:139886404..139888065-chr9:139922144..139924754,2	K562	blood:
9	chr9:139795418..139796997-chr9:139886315..139888091,2	MCF-7	breast:
10	chr9:139885878..139888824-chr9:139906118..139907790,3	MCF-7	breast:
11	chr9:139887009..139891306-chr9:139978318..139981819,5	MCF-7	breast:
12	chr9:139883263..139888307-chr9:139901278..139904869,5	K562	blood:
13	chr9:139754584..139762382-chr9:139883048..139889143,8	MCF-7	breast:
14	chr5:87563679..87564629-chr9:139886457..139887098,2	Hela-S3	cervix:
15	chr9:139885641..139893253-chr9:139914079..139925631,41	MCF-7	breast:
16	chr9:139886372..139889256-chr9:139905188..139908496,3	K562	blood:
17	chr9:139885074..139890200-chr9:139937599..139941654,8	MCF-7	breast:
18	chr9:139885152..139889374-chr9:139914138..139918974,10	K562	blood:
19	chr9:139885718..139888634-chr9:140133722..140135895,2	MCF-7	breast:
20	chr9:139835507..139852162-chr9:139884980..139895056,54	MCF-7	breast:
21	chr9:139885686..139887424-chr9:140062463..140065050,2	MCF-7	breast:
22	chr9:139830850..139832636-chr9:139886435..139888722,2	MCF-7	breast:
23	chr8:30669597..30670277-chr9:139886710..139887313,2	Hela-S3	cervix:
24	chr9:139886564..139889024-chr9:139934551..139937235,2	MCF-7	breast:
25	chr9:139886371..139887940-chr9:139938142..139940541,2	MCF-7	breast:
26	chr9:139886700..139892258-chr9:139898628..139905253,11	MCF-7	breast:
27	chr15:91475195..91475986-chr9:139886745..139887396,2	Hela-S3	cervix:
28	chr9:139836188..139848313-chr9:139883522..139894647,40	MCF-7	breast:
29	chr9:139885572..139888217-chr9:140133732..140136326,3	K562	blood:
30	chr1:149858159..149858685-chr9:139886619..139887164,2	Hela-S3	cervix:
31	chr9:139604913..139607093-chr9:139886395..139889086,2	K562	blood:
32	chr9:139884830..139892589-chr9:139945996..139953148,8	MCF-7	breast:
33	chr9:139886598..139890745-chr9:139905210..139907728,3	K562	blood:
34	chr9:139836972..139840310-chr9:139885072..139887174,4	K562	blood:
35	chr20:30194535..30195102-chr9:139886521..139887310,2	Hela-S3	cervix:
36	chr9:139739695..139750977-chr9:139884187..139892196,24	MCF-7	breast:
37	chr9:139886404..139888312-chr9:139922144..139924754,3	K562	blood:
38	chr9:139836453..139844148-chr9:139884945..139890988,15	K562	blood:
39	chr9:139742078..139744191-chr9:139885946..139887958,2	K562	blood:
40	chr9:139885520..139888422-chr9:139914138..139918974,8	K562	blood:
41	chr9:139439060..139440711-chr9:139885365..139888105,2	K562	blood:
42	chr9:139684580..139687679-chr9:139885169..139891093,6	MCF-7	breast:

No data

Variant related genes	Relation type
C9orf142	TF binding region
ENSG00000159069	Chromatin interaction
ENSG00000244187	Chromatin interaction
ENSG00000184925	Chromatin interaction
ENSG00000264395	Chromatin interaction
ENSG00000164180	Chromatin interaction
ENSG00000212864	Chromatin interaction
ENSG00000272896	Chromatin interaction
ENSG00000107223	Chromatin interaction
ENSG00000180549	Chromatin interaction
ENSG00000184709	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000127191	Chromatin interaction
ENSG00000229257	Chromatin interaction
ENSG00000237886	Chromatin interaction
ENSG00000268996	Chromatin interaction
ENSG00000176919	Chromatin interaction
ENSG00000263697	Chromatin interaction
ENSG00000107331	Chromatin interaction
ENSG00000054179	Chromatin interaction
ENSG00000165716	Chromatin interaction
ENSG00000104695	Chromatin interaction
ENSG00000196642	Chromatin interaction
ENSG00000235117	Chromatin interaction
ENSG00000213213	Chromatin interaction
ENSG00000272679	Chromatin interaction
ENSG00000273066	Chromatin interaction
ENSG00000188229	Chromatin interaction
ENSG00000236394	Chromatin interaction
ENSG00000177943	Chromatin interaction
ENSG00000260190	Chromatin interaction
ENSG00000107281	Chromatin interaction
ENSG00000177239	Chromatin interaction
ENSG00000054148	Chromatin interaction
ENSG00000184508	Chromatin interaction
ENSG00000180539	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000148400	Chromatin interaction

Extended variants
information (count: 105 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10114463	0.85[ASN][1000 genomes]
rs10781529	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10781530	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10870154	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10870155	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10870157	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10870158	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12340777	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12343591	0.89[ASN][1000 genomes]
rs12343713	0.93[ASN][1000 genomes]
rs12350318	0.93[ASN][1000 genomes]
rs17578859	0.82[ASN][1000 genomes]
rs2049040	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2049041	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2049043	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2271862	0.85[EUR][1000 genomes]
rs28609008	0.82[ASN][1000 genomes]
rs3814499	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3814500	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3814501	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3829902	0.88[ASN][1000 genomes]
rs41306732	0.84[ASN][1000 genomes]
rs4355883	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4576515	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4880082	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4880180	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4880182	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62585806	0.85[ASN][1000 genomes]
rs6560653	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7022347	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7029565	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7048567	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72763205	0.88[ASN][1000 genomes]
rs7388671	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7470867	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7849705	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7854838	0.87[EUR][1000 genomes]
rs7860430	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:67 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540342	chr9:139218422-139973312	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	317 gene(s)	inside rSNPs	diseases
2	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
3	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
4	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
5	esv1803979	chr9:139395473-139979276	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
6	esv1831778	chr9:139395473-139979276	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
7	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
8	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
9	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
10	nsv894451	chr9:139598108-139995065	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
11	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
12	nsv894454	chr9:139607966-139904037	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	172 gene(s)	inside rSNPs	diseases
13	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
14	nsv818738	chr9:139634495-139904037	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	126 gene(s)	inside rSNPs	diseases
15	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
16	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
17	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
18	nsv894469	chr9:139693992-140118448	Bivalent Enhancer Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
19	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
20	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
21	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
22	nsv894483	chr9:139709976-139963091	Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	119 gene(s)	inside rSNPs	diseases
23	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
24	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
25	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
26	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
27	esv1803771	chr9:139776400-140274255	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
28	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
29	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
30	esv1823828	chr9:139820363-140023694	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	121 gene(s)	inside rSNPs	diseases
31	esv1822764	chr9:139822266-140202692	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
32	nsv894500	chr9:139823670-139930945	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	85 gene(s)	inside rSNPs	diseases
33	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
34	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
35	nsv894503	chr9:139830940-139987350	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
36	esv1834381	chr9:139834195-140031290	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	125 gene(s)	inside rSNPs	diseases
37	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
38	nsv894506	chr9:139841512-140143801	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	278 gene(s)	inside rSNPs	diseases
39	nsv894507	chr9:139860264-139995065	Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
40	nsv894512	chr9:139860631-139894734	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
41	nsv894513	chr9:139860631-139904037	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
42	nsv894514	chr9:139860631-139943112	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	79 gene(s)	inside rSNPs	diseases
43	nsv894515	chr9:139860631-139963091	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
44	nsv894517	chr9:139860631-139977351	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
45	nsv894516	chr9:139860631-139979276	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
46	nsv894518	chr9:139860631-139995065	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
47	nsv466690	chr9:139860631-140042320	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	117 gene(s)	inside rSNPs	diseases
48	nsv615989	chr9:139860631-140042320	Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	117 gene(s)	inside rSNPs	diseases
49	nsv615990	chr9:139860631-140068342	Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	118 gene(s)	inside rSNPs	diseases
50	nsv894519	chr9:139860631-140123584	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10870159	C9orf142	cis	temporal cortex	BrainEAC
rs10870159	C9orf142	cis	brain	BrainEAC
rs10870159	C9orf142	cis	hippocampus	BrainEAC
rs10870159	LCN12	cis	brain	BrainEAC
rs10870159	RP11-229P13.19	cis	Whole Blood	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139885600-139887200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:139885600-139888000	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:139885800-139887200	Active TSS	Primary T helper cells fromperipheralblood	blood
4	chr9:139886000-139887200	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr9:139886000-139887200	Active TSS	Colonic Mucosa	Colon
6	chr9:139886000-139887400	Active TSS	Rectal Smooth Muscle	rectum
7	chr9:139886000-139887600	Active TSS	A549	lung
8	chr9:139886200-139887200	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr9:139886200-139887200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:139886200-139887200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:139886200-139887200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
12	chr9:139886200-139887200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr9:139886200-139887200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:139886200-139887200	Active TSS	Brain Anterior Caudate	brain
15	chr9:139886200-139887200	Active TSS	Duodenum Mucosa	Duodenum
16	chr9:139886200-139887200	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr9:139886200-139887200	Active TSS	Fetal Intestine Small	intestine
18	chr9:139886200-139887200	Active TSS	Fetal Thymus	thymus
19	chr9:139886200-139887200	Active TSS	Pancreas	Pancrea
20	chr9:139886200-139887200	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr9:139886200-139887200	Active TSS	Rectal Mucosa Donor 31	rectum
22	chr9:139886200-139887400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:139886200-139887400	Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr9:139886200-139887400	Active TSS	Brain Cingulate Gyrus	brain
25	chr9:139886200-139887400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr9:139886200-139887400	Active TSS	Psoas Muscle	Psoas
27	chr9:139886200-139887400	Active TSS	Right Atrium	heart
28	chr9:139886200-139887400	Active TSS	Hela-S3	cervix
29	chr9:139886200-139887400	Active TSS	Osteobl	bone
30	chr9:139886200-139887600	Active TSS	H9 Cell Line	embryonic stem cell
31	chr9:139886200-139887600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr9:139886200-139887600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:139886200-139887600	Active TSS	Primary T killer memory cells from peripheral blood	blood
34	chr9:139886200-139887600	Active TSS	Ovary	ovary
35	chr9:139886200-139887800	Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr9:139886400-139887200	Active TSS	ES-I3 Cell Line	embryonic stem cell
37	chr9:139886400-139887200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr9:139886400-139887200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr9:139886400-139887200	Active TSS	Primary B cells from peripheral blood	blood
40	chr9:139886400-139887200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
41	chr9:139886400-139887200	Active TSS	Muscle Satellite Cultured Cells	--
42	chr9:139886400-139887200	Active TSS	Cortex derived primary cultured neurospheres	brain
43	chr9:139886400-139887200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr9:139886400-139887200	Active TSS	Brain Hippocampus Middle	brain
45	chr9:139886400-139887200	Active TSS	Brain Inferior Temporal Lobe	brain
46	chr9:139886400-139887200	Active TSS	Brain Substantia Nigra	brain
47	chr9:139886400-139887200	Active TSS	Esophagus	oesophagus
48	chr9:139886400-139887200	Active TSS	Fetal Brain Female	brain
49	chr9:139886400-139887200	Bivalent/Poised TSS	Fetal Stomach	stomach
50	chr9:139886400-139887200	Active TSS	Placenta Amnion	Placenta Amnion

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