Variant report

Variant	rs10871337
Chromosome Location	chr16:77472000-77472001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr16:77471706-77472154	H1-hESC	embryonic stem cell:	n/a	n/a
2	RAD21	chr16:77471714-77472169	ECC-1	luminal epithelium:	n/a	n/a
3	RAD21	chr16:77471812-77472066	HepG2	liver:	n/a	n/a
4	RAD21	chr16:77471821-77472203	HCT-116	colon:	n/a	n/a
5	CTCF	chr16:77471920-77472070	HFF-Myc	foreskin:	n/a	chr16:77471948-77471969
6	CTCF	chr16:77471900-77472050	MCF-7	breast:	n/a	chr16:77471948-77471969
7	CTCF	chr16:77471960-77472110	HAc	cerebellar:	n/a	n/a
8	CTCF	chr16:77471980-77472130	A549	lung:	n/a	n/a
9	CTCF	chr16:77471880-77472030	HUVEC	blood vessel:	n/a	chr16:77471948-77471969
10	CTCF	chr16:77471900-77472050	HPAF	blood vessel:	n/a	chr16:77471948-77471969
11	RAD21	chr16:77471854-77472129	HepG2	liver:	n/a	n/a
12	CTCF	chr16:77471880-77472030	NHDF-neo	bronchial:	n/a	chr16:77471948-77471969
13	CTCF	chr16:77471880-77472030	WERI-Rb-1	eye:	n/a	chr16:77471948-77471969
14	CTCF	chr16:77471880-77472030	HCM	heart:	n/a	chr16:77471948-77471969
15	CTCF	chr16:77471900-77472050	AoAF	blood vessel:	n/a	chr16:77471948-77471969
16	CTCF	chr16:77471880-77472030	HPAF	blood vessel:	n/a	chr16:77471948-77471969
17	CTCF	chr16:77471900-77472050	HRPEpiC	eye:	n/a	chr16:77471948-77471969
18	GTF2F1	chr16:77471831-77472005	H1-hESC	embryonic stem cell:	n/a	n/a
19	CTCF	chr16:77471940-77472090	WI-38	lung:	n/a	chr16:77471948-77471969
20	STAT3	chr16:77471903-77472079	MCF10A-Er-Src	breast:	n/a	chr16:77471915-77471924 chr16:77471914-77471923 chr16:77471912-77471926 chr16:77471913-77471924
21	CTCF	chr16:77471860-77472010	AG04450	lung:	n/a	chr16:77471948-77471969
22	CTCF	chr16:77471817-77472101	HUVEC	blood vessel:	n/a	chr16:77471948-77471969
23	CTCF	chr16:77471838-77472026	HepG2	liver:	n/a	chr16:77471948-77471969
24	CTCF	chr16:77471860-77472010	HBMEC	blood vessel:	n/a	chr16:77471948-77471969
25	CTCF	chr16:77471880-77472030	HCPEpiC	choroid plexus:	n/a	chr16:77471948-77471969
26	CTCF	chr16:77471664-77472194	A549	lung:	n/a	chr16:77471948-77471969
27	CTCF	chr16:77471904-77472018	GM12878	blood:	n/a	chr16:77471948-77471969
28	RAD21	chr16:77471717-77472236	HCT-116	colon:	n/a	n/a
29	CTCF	chr16:77471818-77472099	GM12878	blood:	n/a	chr16:77471948-77471969
30	CTCF	chr16:77471804-77472089	K562	blood:	n/a	chr16:77471948-77471969
31	CTCF	chr16:77471912-77472000	Hela-S3	cervix:	n/a	chr16:77471948-77471969
32	CTCF	chr16:77471940-77472090	NHDF-neo	bronchial:	n/a	chr16:77471948-77471969
33	CTCF	chr16:77471860-77472010	AoAF	blood vessel:	n/a	chr16:77471948-77471969
34	RAD21	chr16:77471725-77472135	A549	lung:	n/a	n/a
35	CTCF	chr16:77471835-77472084	MCF-7	breast:	n/a	chr16:77471948-77471969
36	CTCF	chr16:77471880-77472030	AG10803	skin:	n/a	chr16:77471948-77471969
37	STAT3	chr16:77471879-77472014	MCF10A-Er-Src	breast:	n/a	chr16:77471915-77471924 chr16:77471914-77471923 chr16:77471912-77471926 chr16:77471913-77471924
38	CTCF	chr16:77471880-77472030	AG09319	gingival:	n/a	chr16:77471948-77471969
39	CTCF	chr16:77471860-77472010	AG09319	gingival:	n/a	chr16:77471948-77471969
40	RAD21	chr16:77471767-77472176	H1-hESC	embryonic stem cell:	n/a	n/a
41	CTCF	chr16:77471880-77472030	HVMF	connective:	n/a	chr16:77471948-77471969
42	CTCF	chr16:77471735-77472081	H1-hESC	embryonic stem cell:	n/a	chr16:77471948-77471969
43	CTCF	chr16:77471862-77472039	LNCaP	prostate:	n/a	chr16:77471948-77471969
44	CTCF	chr16:77471873-77472040	Gliobla	brain:	n/a	chr16:77471948-77471969
45	RAD21	chr16:77471843-77472123	SK-N-SH_RA	brain:	n/a	n/a
46	CTCF	chr16:77471852-77472090	A549	lung:	n/a	chr16:77471948-77471969
47	CTCF	chr16:77471900-77472050	HA-sp	spinal cord:	n/a	chr16:77471948-77471969
48	RAD21	chr16:77471674-77472223	H1-hESC	embryonic stem cell:	n/a	n/a
49	STAT3	chr16:77471905-77472080	MCF10A-Er-Src	breast:	n/a	chr16:77471915-77471924 chr16:77471914-77471923 chr16:77471912-77471926 chr16:77471913-77471924
50	CTCF	chr16:77471824-77472084	Medullo	brain:	n/a	chr16:77471948-77471969

No.	Distal block	Cell Line	Cell type
1	chr16:77269656..77270610-chr16:77471829..77472511,2	MCF-7	breast:
2	chr16:77471519..77472123-chr16:77694084..77694927,2	MCF-7	breast:
3	chr16:77471559..77472162-chr16:77617897..77618748,2	MCF-7	breast:
4	chr16:77471508..77472616-chr16:77617706..77618810,7	MCF-7	breast:
5	chr16:77470494..77473466-chr16:77473923..77475786,2	K562	blood:

Variant related genes	Relation type
ADAMTS18	TF binding region
ENSG00000216131	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1032720	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11640928	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11646638	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12918718	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1389516	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1389517	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1389518	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1389519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2172624	0.94[ASN][1000 genomes]
rs35065365	0.80[ASN][1000 genomes]
rs4888630	0.97[ASN][1000 genomes]
rs4888631	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4888633	0.94[ASN][1000 genomes]
rs7185964	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7190156	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7191303	0.81[ASN][1000 genomes]
rs7195243	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7195757	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7199315	0.94[ASN][1000 genomes]
rs7199469	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7200116	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7204308	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs749754	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs923871	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065048	chr16:77003426-77675163	Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	esv2830376	chr16:77014551-77658185	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv1065149	chr16:77032082-77671890	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv1056676	chr16:77139682-77854848	Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv1066258	chr16:77229953-77521919	Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv542968	chr16:77229953-77521919	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2761916	chr16:77277005-77555833	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1059194	chr16:77281068-77745928	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv542969	chr16:77281068-77745928	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv1061875	chr16:77451850-78003403	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv906957	chr16:77457066-77643421	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv869119	chr16:77458671-78008053	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:77469600-77476800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr16:77469800-77472400	Weak transcription	HUVEC	blood vessel
3	chr16:77469800-77473000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr16:77470200-77472600	Weak transcription	Adipose Nuclei	Adipose
5	chr16:77470600-77477200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr16:77471200-77473600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr16:77471200-77476800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr16:77471600-77474000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr16:77471800-77473400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr16:77472000-77472200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr16:77472000-77472600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
12	chr16:77472000-77473000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
13	chr16:77472000-77473000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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