Variant report

Variant	rs10874404
Chromosome Location	chr1:84127328-84127329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10782814	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10782815	0.93[ASN][1000 genomes]
rs10874403	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10874405	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11590582	0.94[ASN][1000 genomes]
rs11590583	0.94[ASN][1000 genomes]
rs12409454	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4379690	0.94[ASN][1000 genomes]
rs4415589	0.94[ASN][1000 genomes]
rs4548461	0.94[ASN][1000 genomes]
rs61790671	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7417359	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3320331	chr1:84125858-84127369	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10874404	PMEPA1	trans	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84122800-84131800	Weak transcription	Pancreas	Pancrea
2	chr1:84126400-84132000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links