Variant report

Variant	rs10874791
Chromosome Location	chr1:92028222-92028223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:92021694..92023708-chr1:92027913..92029758,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12041649	0.83[ASN][1000 genomes]
rs6689719	0.90[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10874791	CDC7	cis	brain	BrainEAC

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92019200-92035000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:92019400-92030200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:92021400-92035000	Weak transcription	Right Ventricle	heart
4	chr1:92022600-92030200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:92022600-92030400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:92023000-92030400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:92023200-92029800	Weak transcription	NHDF-Ad	bronchial
8	chr1:92023200-92030400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:92023200-92030600	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:92023200-92030600	Weak transcription	Lung	lung
11	chr1:92023200-92034800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:92023200-92035200	Weak transcription	Spleen	Spleen
13	chr1:92025000-92030400	Weak transcription	Fetal Heart	heart
14	chr1:92025200-92030400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr1:92026200-92029000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:92026400-92029400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:92026600-92029000	Weak transcription	Esophagus	oesophagus
18	chr1:92027400-92030200	Weak transcription	Placenta	Placenta
19	chr1:92027600-92030200	Weak transcription	Fetal Stomach	stomach
20	chr1:92027600-92030200	Weak transcription	K562	blood
21	chr1:92027600-92030400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr1:92027600-92030600	Weak transcription	Fetal Thymus	thymus
23	chr1:92027600-92034800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr1:92027800-92033400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr1:92028000-92030400	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr1:92028000-92030400	Weak transcription	Fetal Lung	lung

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