Variant report

Variant	rs10874860
Chromosome Location	chr1:95032518-95032519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10874857	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10874859	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10874862	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10874863	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11165175	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1146505	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12029080	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12121442	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12128453	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1475253	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2022030	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2022309	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4609438	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6659810	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531881	chr1:94937444-95053785	Weak transcription Bivalent Enhancer Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv870696	chr1:95005220-95081587	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv871391	chr1:95005220-95083836	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
5	nsv871279	chr1:95028981-95083836	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95028600-95043400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:95029000-95034400	Weak transcription	HSMMtube	muscle
3	chr1:95031800-95032800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:95031800-95032800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:95032200-95032600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links