Variant report

Variant	rs10874872
Chromosome Location	chr1:95109445-95109446
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95104382..95108045-chr1:95108728..95112831,4	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10874869	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs10874870	0.86[ASN][1000 genomes]
rs1341643	0.92[ASN][1000 genomes]
rs1341644	0.92[ASN][1000 genomes]
rs2971937	0.91[ASN][1000 genomes]
rs2996286	0.91[ASN][1000 genomes]
rs3885983	0.93[ASN][1000 genomes]
rs4847319	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6541357	0.92[ASN][1000 genomes]
rs715813	0.93[ASN][1000 genomes]
rs7537169	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv519997	chr1:95083836-95113417	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1910	chr1:95100383-95111872	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95099800-95111600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:95100800-95110600	Weak transcription	NH-A	brain
3	chr1:95100800-95112000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:95102000-95109800	Weak transcription	Pancreas	Pancrea
5	chr1:95102600-95111800	Weak transcription	HSMMtube	muscle
6	chr1:95103200-95111600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:95106800-95114200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:95107000-95112000	Enhancers	Hela-S3	cervix
9	chr1:95107200-95110400	Enhancers	Placenta Amnion	Placenta Amnion
10	chr1:95107200-95110600	Enhancers	Duodenum Mucosa	Duodenum
11	chr1:95107400-95110600	Enhancers	Fetal Intestine Large	intestine
12	chr1:95108000-95114200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr1:95108200-95109600	Enhancers	Lung	lung
14	chr1:95108200-95113200	Weak transcription	Colonic Mucosa	Colon
15	chr1:95108400-95109600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:95108400-95109800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:95108400-95109800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr1:95108400-95110600	Enhancers	Fetal Intestine Small	intestine
19	chr1:95108400-95112000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:95108400-95119000	Weak transcription	Right Ventricle	heart
21	chr1:95108600-95109800	Weak transcription	HMEC	breast
22	chr1:95108600-95112200	Weak transcription	Small Intestine	intestine
23	chr1:95108600-95113200	Weak transcription	Stomach Mucosa	stomach
24	chr1:95108800-95109800	Enhancers	Placenta	Placenta
25	chr1:95108800-95112000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr1:95108800-95113000	Weak transcription	Fetal Heart	heart
27	chr1:95109200-95109600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:95109200-95109600	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr1:95109200-95109800	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr1:95109200-95110000	Enhancers	H9 Cell Line	embryonic stem cell
31	chr1:95109200-95110000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr1:95109200-95110400	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr1:95109200-95110800	Enhancers	NHLF	lung
34	chr1:95109200-95114800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr1:95109200-95114800	Enhancers	HSMM	muscle
36	chr1:95109400-95109600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr1:95109400-95109800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr1:95109400-95110000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr1:95109400-95110200	Enhancers	H1 Cell Line	embryonic stem cell
40	chr1:95109400-95110200	Enhancers	Rectal Mucosa Donor 29	rectum
41	chr1:95109400-95110200	Enhancers	NHDF-Ad	bronchial
42	chr1:95109400-95114200	Enhancers	NHEK	skin

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