Variant report

Variant	rs10875863
Chromosome Location	chr12:49117301-49117302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10783273	0.81[EUR][1000 genomes]
rs10783274	0.82[EUR][1000 genomes]
rs10875852	0.81[EUR][1000 genomes]
rs10875853	0.81[EUR][1000 genomes]
rs10875862	0.87[EUR][1000 genomes]
rs11168665	0.81[EUR][1000 genomes]
rs11168697	0.84[EUR][1000 genomes]
rs11168698	0.89[EUR][1000 genomes]
rs12299955	0.82[EUR][1000 genomes]
rs1316514	0.89[EUR][1000 genomes]
rs2162317	0.87[EUR][1000 genomes]
rs2277365	0.84[EUR][1000 genomes]
rs2291728	0.91[EUR][1000 genomes]
rs4113946	0.81[EUR][1000 genomes]
rs4500528	0.81[EUR][1000 genomes]
rs4760739	0.82[EUR][1000 genomes]
rs9332441	0.83[EUR][1000 genomes]
rs9634242	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332169	chr12:49005807-49150691	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10875863	KANSL2	cis	lung	GTEx
rs10875863	KANSL2	cis	Nerve Tibial	GTEx
rs10875863	KANSL2	cis	Esophagus Muscularis	GTEx
rs10875863	KANSL2	cis	Thyroid	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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