Variant report

Variant	rs10875918
Chromosome Location	chr12:49476629-49476630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:49462894..49465042-chr12:49474015..49476697,2	MCF-7	breast:
2	chr12:49475142..49476753-chr12:49658350..49661083,2	K562	blood:

Variant related genes	Relation type
ENSG00000167553	Chromatin interaction
ENSG00000167550	Chromatin interaction
ENSG00000258101	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10459221	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10459232	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10783300	0.80[ASN][1000 genomes]
rs10783301	0.89[ASN][1000 genomes]
rs10875908	0.80[ASN][1000 genomes]
rs10875910	0.80[ASN][1000 genomes]
rs10875911	0.80[ASN][1000 genomes]
rs10875912	0.83[ASN][1000 genomes]
rs10875913	0.83[ASN][1000 genomes]
rs10875914	0.83[ASN][1000 genomes]
rs10875915	0.83[ASN][1000 genomes]
rs10875917	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11168827	0.82[ASN][1000 genomes]
rs11168838	0.94[ASN][1000 genomes]
rs11168839	0.95[ASN][1000 genomes]
rs11168850	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1138908	0.80[ASN][1000 genomes]
rs11614738	0.84[ASN][1000 genomes]
rs12298884	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12580349	0.85[ASN][1000 genomes]
rs12821008	0.97[ASN][1000 genomes]
rs2117029	0.80[ASN][1000 genomes]
rs2241726	0.89[ASN][1000 genomes]
rs2293445	0.80[ASN][1000 genomes]
rs2293446	0.81[ASN][1000 genomes]
rs2304275	0.89[ASN][1000 genomes]
rs34436857	0.89[ASN][1000 genomes]
rs3782357	0.84[ASN][1000 genomes]
rs6580698	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6580699	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7296288	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7300136	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7969091	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs876333	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051161	chr12:49314550-49828473	Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
2	nsv541489	chr12:49314550-49828473	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
3	nsv558833	chr12:49358880-49478812	Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv1036452	chr12:49376285-49867760	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	315 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10875918	DDN	cis	Muscle Skeletal	GTEx
rs10875918	RP11-386G11.3	cis	Muscle Skeletal	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:49474400-49479800	Weak transcription	HSMMtube	muscle
2	chr12:49474400-49481800	Weak transcription	HSMM	muscle
3	chr12:49476200-49481800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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