Variant report

Variant	rs10876931
Chromosome Location	chr12:57212490-57212491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10876920	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10876921	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10876930	0.96[ASN][1000 genomes]
rs11171985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11171986	0.83[GIH][hapmap]
rs2371559	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2371561	0.92[ASN][1000 genomes]
rs4277148	0.83[GIH][hapmap]
rs7136081	0.92[ASN][1000 genomes]
rs7957053	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040850	chr12:57055011-57679209	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10876931	PRIM1	cis	lymphoblastoid	seeQTL
rs10876931	HSD17B6	cis	parietal	SCAN
rs10876931	AVIL	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57211000-57213400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:57211800-57212800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr12:57212000-57212600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr12:57212200-57212800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr12:57212200-57212800	Enhancers	A549	lung
6	chr12:57212200-57212800	Enhancers	NHEK	skin
7	chr12:57212400-57212600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr12:57212400-57212800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:57212400-57212800	Enhancers	Hela-S3	cervix
10	chr12:57212400-57212800	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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