Variant report

Variant	rs10877071
Chromosome Location	chr12:58498926-58498927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2088987	0.82[EUR][1000 genomes]
rs265579	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2939817	0.91[CEU][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs60819865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7956463	0.83[EUR][1000 genomes]
rs7960648	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899124	chr12:58391839-58883507	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2830232	chr12:58470456-58498926	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv729	chr12:58490094-58535466	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2760225	chr12:58490832-58514112	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10877071	OR6C65	cis	parietal	SCAN
rs10877071	XRCC6BP1	cis	multi-tissue	Pritchard
rs10877071	XRCC6BP1	cis	Artery Tibial	GTEx
rs10877071	MOBKL2C	trans	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58496800-58499800	Enhancers	Fetal Muscle Leg	muscle
2	chr12:58497800-58499200	Enhancers	Pancreas	Pancrea
3	chr12:58498200-58499000	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr12:58498400-58499000	Weak transcription	Left Ventricle	heart
5	chr12:58498400-58499000	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr12:58498400-58499800	Enhancers	Psoas Muscle	Psoas
7	chr12:58498600-58499200	Weak transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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