Variant report

Variant	rs10877092
Chromosome Location	chr12:58686243-58686244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10128826	0.96[EUR][1000 genomes]
rs10128909	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10128994	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10506388	0.88[EUR][1000 genomes]
rs10506389	0.88[EUR][1000 genomes]
rs10747799	0.96[EUR][1000 genomes]
rs10783886	0.96[EUR][1000 genomes]
rs10783887	0.96[EUR][1000 genomes]
rs10877091	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10877093	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10877094	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10877095	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10877096	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10877097	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10877099	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10877102	0.88[EUR][1000 genomes]
rs10877103	0.88[EUR][1000 genomes]
rs10877104	0.88[EUR][1000 genomes]
rs11172530	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11172531	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11172533	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11172540	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11172542	0.96[EUR][1000 genomes]
rs11172544	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11172546	0.88[EUR][1000 genomes]
rs11172547	0.88[EUR][1000 genomes]
rs11832860	0.88[EUR][1000 genomes]
rs12297015	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12297460	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12317979	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17504503	0.88[EUR][1000 genomes]
rs17582660	0.88[EUR][1000 genomes]
rs1852793	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1908328	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3847701	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3913016	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57782897	0.88[EUR][1000 genomes]
rs61921204	0.95[EUR][1000 genomes]
rs61922270	0.88[EUR][1000 genomes]
rs61922271	0.88[EUR][1000 genomes]
rs61922272	0.88[EUR][1000 genomes]
rs718702	0.88[EUR][1000 genomes]
rs9805094	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899124	chr12:58391839-58883507	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10877092	MAP3K12	cis	cerebellum	SCAN
rs10877092	MFSD5	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58680600-58690200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:58680600-58690400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr12:58680800-58690200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:58685400-58686400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr12:58685400-58686400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr12:58686200-58690200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr12:58686200-58690200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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