Variant report

Variant	rs10877098
Chromosome Location	chr12:58707065-58707066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:58706895..58709674-chr12:58716044..58718187,2	MCF-7	breast:
2	chr12:58702456..58704954-chr12:58705932..58708062,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10877101	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11837242	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11837243	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12821690	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1494513	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2047171	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7965196	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899124	chr12:58391839-58883507	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv730	chr12:58698792-58759096	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58705000-58708200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr12:58705400-58707200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:58705400-58707200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:58705400-58708000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr12:58705400-58708200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr12:58705400-58708200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr12:58705400-58709000	Enhancers	HUVEC	blood vessel
8	chr12:58705400-58710000	Weak transcription	Fetal Intestine Large	intestine
9	chr12:58706200-58709200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr12:58706200-58709400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr12:58706400-58709000	Enhancers	Osteobl	bone
12	chr12:58706600-58708600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr12:58706800-58707600	Enhancers	NHLF	lung
14	chr12:58706800-58708600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr12:58706800-58709000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr12:58706800-58709000	Enhancers	NHDF-Ad	bronchial
17	chr12:58706800-58709200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr12:58707000-58707400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr12:58707000-58707400	Flanking Active TSS	NH-A	brain
20	chr12:58707000-58707600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr12:58707000-58707600	Enhancers	NHEK	skin
22	chr12:58707000-58708000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr12:58707000-58708600	Enhancers	HSMM	muscle
24	chr12:58707000-58708800	Enhancers	HMEC	breast

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